Скрипт трансформации -- запуск

Docker

docker build -t cfsfmba:1.0.0 .

docker run -it --volume=PATH_TO_REF:/home/docker_user/ref --gpus all cfsfmba:1.0.0

Вместо PATH_TO_REF необходимо указать директорию с предпоготовленным референсом

Name		Name	Last commit message	Last commit date
Latest commit History 8 Commits
data		data
scripts		scripts
test		test
.gitignore		.gitignore
.pre-commit-config.yaml		.pre-commit-config.yaml
Dockerfile		Dockerfile
FP_SNPs_README.md		FP_SNPs_README.md
NovaSeq_report.odt		NovaSeq_report.odt
README.md		README.md
prepare_FP_SNPs.sh		prepare_FP_SNPs.sh
prepare_GRCh38.sh		prepare_GRCh38.sh
requirements.txt		requirements.txt
run_test.sh		run_test.sh
run_wheel.sh		run_wheel.sh
runtime.debug		runtime.debug
setup.cfg		setup.cfg
setup.py		setup.py
transform_run.log		transform_run.log