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Add XM_filter's log for bowtie2
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equipeGST committed Oct 18, 2022
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Expand Up @@ -732,6 +732,7 @@ rule samtools_filter_transcriptome:
uniq_header = local_path + "logs/samtools_filter_transcriptome/{sample}.uniq_header.log",
grep_core_hisat2 = local_path + "logs/samtools_filter_transcriptome/{sample}.grep_core_hisat2.log",
XM_filter_hisat2 = local_path + "logs/samtools_filter_transcriptome/{sample}.XM_filter_hisat2.log",
XM_filter_bowtie2 = local_path + "logs/samtools_filter/{sample}.XM_filter_bowtie2.log",
grep_core_bowtie2 = local_path + "logs/samtools_filter_transcriptome/{sample}.grep_core_bowtie2.log",
view_bam = local_path + "logs/samtools_filter_transcriptome/{sample}.view_bam.log",
sort_bam = local_path + "logs/samtools_filter_transcriptome/{sample}.sort_bam.log"
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