docker: add new dependencies; revert to interactive shell

etal · Sep 13, 2016 · 236f1c2 · 236f1c2
1 parent d63dfa9
commit 236f1c2
Showing 1 changed file with 5 additions and 5 deletions.
diff --git a/docker/Dockerfile b/docker/Dockerfile
@@ -15,10 +15,10 @@ RUN apt-get update && apt-get install -y \
     python-tk \
     r-base-core \
     zlib1g-dev
-RUN pip install pandas pysam pyvcf pyfaidx
+RUN pip install future futures pandas pysam pyvcf pyfaidx
 RUN Rscript -e "source('http://bioconductor.org/biocLite.R'); biocLite('PSCBS', 'cghFLasso')"
-RUN pip install cnvkit==0.7.11
+RUN pip install cnvkit
 
-ENTRYPOINT ["cnvkit.py"]
-CMD ["--help"]
-# CMD ["bash"]
+# ENTRYPOINT ["cnvkit.py"]
+# CMD ["--help"]
+CMD ["bash"]