Eh/code test coverage (#93)

* Adding code coverage * Fix coverage testing * Switch from pytest to coverage
euxhenh · Aug 4, 2023 · a76912f · a76912f
1 parent b93a8d0
commit a76912f
Show file tree

Hide file tree

Showing 3 changed files with 7 additions and 5 deletions.
diff --git a/.github/workflows/unittest.yml b/.github/workflows/unittest.yml
@@ -23,12 +23,11 @@ jobs:
     - name: Install dependencies
       run: |
         python -m pip install --upgrade pip
-        pip install pytest
         pip install .
         if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
-    - name: Test with pytest
+    - name: Test with coverage and pytest
       run: |
-        pytest --doctest-modules
+        coverage run -m pytest --doctest-modules
     - name: Upload coverage reports to Codecov
       uses: codecov/codecov-action@v3
       env:

diff --git a/.gitignore b/.gitignore
@@ -13,4 +13,5 @@ conf/*
 docs
 *.h5ad
 figs
-*logs
+*logs
+.coverage
diff --git a/requirements.txt b/requirements.txt
@@ -12,4 +12,6 @@ diptest
 phenotype_cover
 leidenalg
 pyensembl
-seaborn
+seaborn
+coverage
+pytest