Update deploy.sh

script/deploy.ps1

@@ -0,0 +1,153 @@
+#!/usr/bin/env pwsh
+
+$SERVER_HOST = '0.0.0.0'
+$DB_PORT = 33061
+$API_PORT = 6102
+$WEB_PORT = 1080
+$DATA_PATH = 'C:\\sgs'
+
+$MYSQL_PASSWORD = '123456Aa'
+
+foreach ($arg in $args) {
+    if ($arg -match "^(?<key>[^=]+)=(?<value>.+)$") {
+        Set-Variable -Name $matches['key'] -Value $matches['value']
+    }
+}
+
+
+Write-Host "SERVER_HOST=$SERVER_HOST"
+Write-Host "DB_PORT=$DB_PORT"
+Write-Host "API_PORT=$API_PORT"
+Write-Host "WEB_PORT=$WEB_PORT"
+Write-Host "DATA_PATH=$DATA_PATH"
+
+
+function container_check {
+    param (
+        [string]$containerName,
+        [string]$url
+    )
+    $api_exist = (docker inspect --format '{{.State.Running}}' $containerName)
+    if ($api_exist -ne 'true') {
+        Write-Host "$containerName start fail!"
+    } else {
+        Write-Host "$containerName running: $url"
+    }
+}
+
+if (-not (docker --version)) {
+    Write-Host "I: Docker not installed, please install from https://www.docker.com/products/docker-desktop!"
+    exit 0
+} else {
+    Write-Host "I: Docker already installed!"
+}
+
+
+Write-Host "I: Docker is ready!"
+
+if (docker ps | Select-String -Pattern "sgs-web") {
+    Write-Host "I: SGS is running!"
+    do {
+        $input = Read-Host "SGS is already installed, choose your option [1: Re-Install, 2: Update, 3: Re-Start, N: Exit, n: Exit]"
+        switch ($input) {
+            '1' { $_install = 1 }
+            '2' { $_install = 2 }
+            '3' { $_install = 3 }
+            'N' { $_install = 0 }
+            'n' { $_install = 0 }
+            default { Write-Host "Invalid option"; continue }
+        }
+    } until ($input -match '[123Nn]')
+} else {
+    $_install = 1
+}
+
+Write-Host "install = $_install"
+
+$sgs_path = $DATA_PATH
+
+Write-Host "SGS_PATH=$sgs_path"
+
+if ($_install -eq 1 -or $_install -eq 2) {
+    Write-Host 'Install SGS now!'
+    Write-Host "I: Stopping container sgs-mysql"
+    docker container stop sgs-mysql
+    docker container rm -v sgs-mysql
+    Write-Host "I: Stopping container sgs-api"
+    docker container stop sgs-api
+    docker container rm -v sgs-api
+    Write-Host "I: Stopping container sgs-web"
+    docker container stop sgs-web
+    docker container rm -v sgs-web
+
+    Write-Host "I: Pulling image sgs-web"
+    docker pull registry.bioinfotoolkits.net/leeoluo/sgs-web:latest
+
+    Write-Host "I: Pulling image sgs-mysql"
+    docker pull registry.bioinfotoolkits.net/lufang0411/sgs-mysql:latest
+
+    Write-Host "I: Pulling image sgs-api"
+    docker pull registry.bioinfotoolkits.net/lufang0411/sgs-api:latest
+
+    $mysqlPath = "${sgs_path}/mysql"
+    $apiPath = "${sgs_path}/api"
+
+    if (-not (Test-Path -Path $apiPath)) { New-Item -ItemType Directory -Path $apiPath }
+    icacls $apiPath /grant Everyone:"(OI)(CI)F"
+
+    if ($_install -eq 1) { Remove-Item -Recurse -Force $mysqlPath }
+    if (-not (Test-Path -Path $mysqlPath)) { New-Item -ItemType Directory -Path $mysqlPath }
+    icacls $mysqlPath /grant Everyone:"(OI)(CI)F"
+
+    Write-Host "I: Starting SGS!"
+    docker run -d `
+        --restart=always `
+        -v "${sgs_path}/mysql:/var/lib/mysql" `
+        --name sgs-mysql `
+        -p ${DB_PORT}:3306 `
+        -e MYSQL_ROOT_PASSWORD=${MYSQL_PASSWORD} `
+        registry.bioinfotoolkits.net/lufang0411/sgs-mysql:latest
+
+
+    docker run -dit `
+        --restart=always `
+        --name sgs-api `
+        -v "${sgs_path}/api:/home/sgs/data" `
+        -p ${API_PORT}:6102 `
+        -p 6122:22 `
+        --link sgs-mysql `
+        registry.bioinfotoolkits.net/lufang0411/sgs-api:latest /docker-entrypoint.sh
+
+    docker run -d `
+        --restart=always `
+        --name sgs-web `
+        -p ${WEB_PORT}:80 `
+        --link sgs-api `
+        -e API_URL="sgs-api:${API_PORT}" `
+        registry.bioinfotoolkits.net/leeoluo/sgs-web:latest
+
+    Write-Host "I: SGS started!"
+} elseif ($_install -eq 3) {
+    Write-Host 'I: Restarting SGS containers'
+    docker container restart sgs-mysql
+    docker container restart sgs-api
+    docker container restart sgs-web
+    Write-Host "I: SGS restarted!"
+} else {
+    Write-Host "I: SGS already running!"
+}
+
+Start-Sleep -Seconds 3
+container_check "sgs-api" "http://${SERVER_HOST}:${API_PORT}"
+container_check "sgs-web" "http://${SERVER_HOST}:${WEB_PORT}"
+
+$api_check_times = 0
+$token_url = "http://localhost:$API_PORT/api/token/admin"
+while ($api_check_times -le 5) {
+    $api_check_times++
+    if (Invoke-WebRequest $token_url) {
+        break
+    }
+    Write-Host "check token fail! try later by: curl $token_url"
+    Start-Sleep -Seconds 5
+}

script/deploy.sh

@@ -101,7 +101,7 @@ fi
 
 echo "install = $_install"
 
-$sgs_path=${DATA_PATH}
+sgs_path=${DATA_PATH}
 #sgs_path="/data/docker/vol/sgs"
 #if [[ "${machine}" == "Mac" ]]; then
 #    sgs_path="${HOME}/docker/vol/sgs"