feat: move progress bar into bamchunk iterator, unify progress bar. #666
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| name: CI | |
| on: | |
| push: | |
| branches: [ main, master, dev, development ] | |
| pull_request: | |
| branches: [ main, master ] | |
| jobs: | |
| Formatting: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| - name: Install stable toolchain | |
| uses: actions-rs/toolchain@v1 | |
| with: | |
| toolchain: stable | |
| override: true | |
| components: rustfmt | |
| - name: Check format | |
| run: cargo fmt -- --check | |
| Linting: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| - name: Install stable toolchain | |
| uses: actions-rs/toolchain@v1 | |
| with: | |
| toolchain: stable | |
| override: true | |
| components: clippy | |
| - name: Lint with clippy | |
| run: docker run -i $(docker build --pull -q .) cargo clippy --release | |
| Testing: | |
| needs: Formatting | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| - name: Install stable toolchain | |
| uses: actions-rs/toolchain@v1 | |
| with: | |
| toolchain: stable | |
| override: true | |
| - name: Run test | |
| run: | | |
| docker run -i $(docker build --pull -q .) cargo test -p bio-io -p bamlift -p fibertools-rs --release -- --test-threads=1 | |