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  1. CaImAn CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    Python 648 369

  2. finufft finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

    C++ 314 82

  3. DeepFRI DeepFRI Public

    Deep functional residue identification

    Python 314 80

  4. CaImAn-MATLAB CaImAn-MATLAB Public

    Complete Matlab pipeline for large scale calcium imaging data analysis

    MATLAB 254 148

  5. NoRMCorre NoRMCorre Public

    Matlab routines for online non-rigid motion correction of calcium imaging data

    MATLAB 147 91

  6. deepblast deepblast Public

    Neural Networks for Protein Sequence Alignment

    Python 117 21

Repositories

Showing 10 of 187 repositories
  • jax-finufft Public

    JAX bindings to the Flatiron Institute Non-uniform Fast Fourier Transform (FINUFFT) library

    flatironinstitute/jax-finufft’s past year of commit activity
    Python 84 Apache-2.0 3 6 (1 issue needs help) 0 Updated Feb 1, 2025
  • nemos Public

    NEural MOdelS, a statistical modeling framework for neuroscience.

    flatironinstitute/nemos’s past year of commit activity
    Python 85 MIT 8 102 3 Updated Feb 1, 2025
  • neurosift Public

    Browser-based NWB visualization and DANDI exploration

    flatironinstitute/neurosift’s past year of commit activity
    TypeScript 50 Apache-2.0 6 65 1 Updated Feb 1, 2025
  • CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    flatironinstitute/CaImAn’s past year of commit activity
    Python 648 GPL-2.0 369 79 (1 issue needs help) 10 Updated Jan 31, 2025
  • stan-playground Public

    Run Stan models in the browser

    flatironinstitute/stan-playground’s past year of commit activity
    TypeScript 42 Apache-2.0 1 17 6 Updated Jan 31, 2025
  • finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

    flatironinstitute/finufft’s past year of commit activity
    C++ 314 82 47 (3 issues need help) 10 Updated Jan 31, 2025
  • cppdlr Public

    Discrete Lehmann representation of imaginary time Green's functions

    flatironinstitute/cppdlr’s past year of commit activity
    C++ 11 Apache-2.0 5 1 1 Updated Jan 30, 2025
  • spreadkernel Public

    Small library that smears non-uniformly distributed points onto a uniform grid, via a user supplied spreading kernel. This project is supported by the Simons Foundation's Flatiron Institute.

    flatironinstitute/spreadkernel’s past year of commit activity
    C++ 2 0 0 0 Updated Jan 30, 2025
  • web-wavelets-benchmarking Public

    Wasmlets vs Pyodide vs discrete-wavelets benchmark

    flatironinstitute/web-wavelets-benchmarking’s past year of commit activity
    TypeScript 0 1 0 0 Updated Jan 30, 2025
  • neuroRSE Public

    Website for CCN's neuroRSE group

    flatironinstitute/neuroRSE’s past year of commit activity
    CSS 1 MIT 0 0 0 Updated Jan 30, 2025
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