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  1. CaImAn CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    Python 647 374

  2. finufft finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

    C++ 325 84

  3. DeepFRI DeepFRI Public

    Deep functional residue identification

    Python 315 82

  4. CaImAn-MATLAB CaImAn-MATLAB Public

    Complete Matlab pipeline for large scale calcium imaging data analysis

    MATLAB 254 148

  5. NoRMCorre NoRMCorre Public

    Matlab routines for online non-rigid motion correction of calcium imaging data

    MATLAB 148 93

  6. deepblast deepblast Public

    Neural Networks for Protein Sequence Alignment

    Python 119 21

Repositories

Showing 10 of 187 repositories
  • neurosift Public

    Browser-based NWB visualization and DANDI exploration

    flatironinstitute/neurosift’s past year of commit activity
    TypeScript 53 Apache-2.0 8 18 0 Updated Mar 5, 2025
  • nemos Public

    NEural MOdelS, a statistical modeling framework for neuroscience.

    flatironinstitute/nemos’s past year of commit activity
    Python 91 MIT 8 103 (1 issue needs help) 4 Updated Mar 5, 2025
  • simple_ans Public

    Simple ANS (Asymmetric Numeral Systems) implementation in Python/C++

    flatironinstitute/simple_ans’s past year of commit activity
    Python 3 Apache-2.0 4 0 0 Updated Mar 5, 2025
  • Cryo-EM-Heterogeneity-Challenge-1 Public

    The Inaugural Flatiron Institute Cryo-EM Heterogeneity Community Challenge

    flatironinstitute/Cryo-EM-Heterogeneity-Challenge-1’s past year of commit activity
    Jupyter Notebook 8 MIT 0 19 3 Updated Mar 4, 2025
  • CryoLike Public
    flatironinstitute/CryoLike’s past year of commit activity
    Python 8 MIT 4 7 4 Updated Mar 4, 2025
  • CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    flatironinstitute/CaImAn’s past year of commit activity
    Python 647 GPL-2.0 374 86 (1 issue needs help) 13 Updated Mar 4, 2025
  • cryosvd Public
    flatironinstitute/cryosvd’s past year of commit activity
    Jupyter Notebook 4 GPL-3.0 1 0 0 Updated Mar 3, 2025
  • spack Public Forked from spack/spack

    A flexible package manager that supports multiple versions, configurations, platforms, and compilers.

    flatironinstitute/spack’s past year of commit activity
    Python 2 2,384 0 12 Updated Mar 3, 2025
  • jax-finufft Public

    JAX bindings to the Flatiron Institute Non-uniform Fast Fourier Transform (FINUFFT) library

    flatironinstitute/jax-finufft’s past year of commit activity
    Python 89 Apache-2.0 3 6 (1 issue needs help) 0 Updated Mar 3, 2025
  • nifty-ls Public

    A fast Lomb-Scargle periodogram. It's nifty, and uses a NUFFT!

    flatironinstitute/nifty-ls’s past year of commit activity
    Python 37 Apache-2.0 2 4 0 Updated Mar 3, 2025
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