Set version to 0.5.0

CHANGELOG.txt

@@ -1,3 +1,6 @@
+v0.5.0 (2019-07-15)
+- Addapted to segemehl 0.3.4
+- Several clean-ups
 v0.4.5 (2017-12-31)
 - Move documentation to Read the Docs
 - New theme for docs

Makefile

@@ -7,7 +7,7 @@ coverage:
 
 package:
 	# python3 setup.py bdist_wheel
-	python3 setup.py bdist
+	python3 setup.py sdist bdist_wheel
 	rm -rf READemption.egg-info
 	ls dist/*
 
@@ -20,8 +20,9 @@ build:
 
 package_to_pypi:
 	# python3 setup.py bdist_wheel upload
-	python3 setup.py bdist upload
-	@echo "Go to https://pypi.python.org/pypi/READemption/"
+	#	python3 setup.py bdist upload
+	# @echo "Go to https://pypi.python.org/pypi/READemption/"
+	python3 -m twine upload  --verbose  dist/*
 
 html_doc:
 	cd docs && make html && cd ..

bin/reademption

@@ -5,11 +5,11 @@
 import argparse
 from reademptionlib.controller import Controller
 
-__author__ = "Konrad Foerstner <[email protected]>"
-__copyright__ = "2011-2017 by Konrad Foerstner <[email protected]>"
+__author__ = "Konrad Foerstner <[email protected]>, Till Sauerwein <[email protected]>"
+__copyright__ = "2011-2019 by Konrad Foerstner <[email protected], , Till Sauerwein <[email protected]>"
 __license__ = "ISC license"
 __email__ = "[email protected]"
-__version__ = "0.4.5"
+__version__ = "0.5.0"
 
 
 def main():

docs/source/conf.py

@@ -41,16 +41,16 @@
 
 # General information about the project.
 project = u'READemption'
-copyright = u'2017, Konrad U. Förstner'
+copyright = u'2019, Konrad U. Förstner and Till Sauerwein'
 
 # The version info for the project you're documenting, acts as replacement for
 # |version| and |release|, also used in various other places throughout the
 # built documents.
 #
 # The short X.Y version.
-version = '0.4'
+version = '0.5'
 # The full version, including alpha/beta/rc tags.
-release = '0.4.5'
+release = '0.5.0'
 
 # The language for content autogenerated by Sphinx. Refer to documentation
 # for a list of supported languages.

setup.py

@@ -5,17 +5,17 @@
 
 setup(
     name='READemption',
-    version='0.4.5',
+    version='0.5.0',
     packages=['reademptionlib', 'tests'],
-    author='Konrad U. Förstner',
+    author='Konrad U. Förstner, Till Sauerwein',
     author_email='[email protected]',
     description='A RNA-Seq Analysis Pipeline',
     url='',
     install_requires=[
-        "biopython >= 1.67",
-        "matplotlib >= 1.5.1",
-        "pandas >= 0.18.1",
-        "pysam >= 0.9.1.4"
+        "biopython >= 1.73",
+        "matplotlib >= 2.2.2",
+        "pandas >= 0.24.2",
+        "pysam >= 0.15.2"
     ],
     scripts=['bin/reademption'],
     license='ISC License (ISCL)',