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1. abcwcm/GeartySchietinger abcwcm/GeartySchietinger Public

   Scripts related to bulkRNA-seq as well as single-cell CITE-seq and VDJ-seq data of Gearty et al. (2021)

   HTML 5 4

2. abcwcm/Scott2019 abcwcm/Scott2019 Public

   Code and data for the bulk RNA-seq and bulk ATAC-seq data of tumor-infiltrating CD8 T cells (and controls) as published in Scott et al., Nature (2019).

   Makefile

3. abcwcm/Chandran2021 abcwcm/Chandran2021 Public

   Code and access to data related to the SIFT-seq publication by Chandran et al., Nature Medicine (2022)

   HTML 1

4. Notes Notes Public

   Personal notes about work- and coding-related topics

   R 18 10

5. deeptools/deepTools deeptools/deepTools Public

   Tools to process and analyze deep sequencing data.

   Python 683 211

6. SingleR-inc/SingleR SingleR-inc/SingleR Public

   Clone of the Bioconductor repository for the SingleR package.

   R 177 19