dev setup:
- clone this repo and
cd
into it - run
find scripts/ -iname "*[.py.py|.R.R]" -exec conda run --name jupyterhub jupytext --sync {} \;
to convert all percent scripts to jupyter notebooks - execute
run_slurm_jobs.sh --rerun-incomplete --rerun-triggers mtime -k --restart-times 1
to run the snakemake pipeline