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Add ENA_Biodiv_submission Tutorial #5117

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fb641d0
Add files via upload
Najatamk Jul 3, 2024
929f6ef
Delete topics/ecology/tutorials/DATA-SUBMISSION-TO-ENA directory wron…
Najatamk Jul 3, 2024
274273a
Add files via upload
Najatamk Jul 3, 2024
28d6caa
Update tutorial.md correct contributors
Najatamk Jul 4, 2024
8adafdc
Update CONTRIBUTORS.yaml Add contributor
Najatamk Jul 4, 2024
c437480
Update CONTRIBUTORS.yaml
Najatamk Jul 4, 2024
884edee
Update tutorial.md
Najatamk Jul 4, 2024
4f7865e
update workflow
Najatamk Jul 4, 2024
e644083
Update CONTRIBUTORS.yaml
Najatamk Jul 4, 2024
b39fc95
Update workflow Link tutorial.md
Najatamk Jul 5, 2024
f4048a3
worklow file update
Najatamk Jul 5, 2024
364b035
typos correction Update tutorial.md
Najatamk Jul 5, 2024
1df148f
Update tutorial.md
Najatamk Jul 8, 2024
d248e63
Update tutorial.md
Najatamk Jul 8, 2024
97bdd99
correct typo
yvanlebras Jul 8, 2024
6d03d74
Update tutorial.md
yvanlebras Jul 8, 2024
308698f
add Pauline Yvan and pndb
yvanlebras Jul 8, 2024
d611328
Update tutorial.md add direct download link of ENA checklist default
yvanlebras Jul 9, 2024
5246366
Update tutorial.md
yvanlebras Jul 9, 2024
8fdf09b
Update test data link tutorial.md
Najatamk Jul 9, 2024
24776cf
Example metadata template
Najatamk Jul 9, 2024
a6cd456
Add irect download link of ENA template populated
yvanlebras Jul 9, 2024
ef2a81e
add step to upload ENA template
yvanlebras Jul 9, 2024
ed7b743
ADD PaulineSDG to CONTRIBUTORS.yaml
Najatamk Jul 11, 2024
5a80f25
Update CONTRIBUTORS.yaml
Najatamk Jul 11, 2024
601ef82
Update tutorial.md
Najatamk Jul 12, 2024
9d5afc7
Update tutorial.md
Najatamk Jul 12, 2024
f5c9668
Clean boxes ;) and others syntax
yvanlebras Jul 22, 2024
603b008
Continue cleaning boxes not well opened or closed ;)
yvanlebras Jul 22, 2024
6edbc4a
New cleaning boxes
yvanlebras Jul 22, 2024
037ce86
clean snippets as tool ID mentions
yvanlebras Jul 22, 2024
0200683
udpate tool id ENA upload
yvanlebras Jul 22, 2024
7d06e98
delete workflow
yvanlebras Jul 22, 2024
4ce2023
Update tutorial.md to see if building site is ok now
yvanlebras Sep 9, 2024
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13 changes: 12 additions & 1 deletion CONTRIBUTORS.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -1576,6 +1576,11 @@ nagoue:
email: [email protected]
orcid: 0000-0003-2750-1473
joined: 2019-07

Najatamk:
name: Najat Amoukou
email: [email protected]
joined: 2024-07

nakucher:
name: Natalie Kucher
Expand Down Expand Up @@ -1740,7 +1745,13 @@ patrick-austin:
paulineauffret:
name: Pauline Auffret
joined: 2022-08


PaulineSGN:
name: Pauline Seguineau
joined: 2024-01
email: [email protected]
orcid: 0009-0009-5969-8478

pauldg:
name: Paul De Geest
joined: 2023-04
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42 changes: 42 additions & 0 deletions topics/ecology/tutorials/ENA_Biodiv_submission/tutorial.bib
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@@ -0,0 +1,42 @@

# This is the bibliography file for your tutorial.
#
# To add bibliography (bibtex) entries here, follow these steps:
# 1) Find the DOI for the article you want to cite
# 2) Go to https://doi2bib.org and fill in the DOI
# 3) Copy the resulting bibtex entry into this file
#
# To cite the example below, in your tutorial.md file
# use {% cite Batut2018 %}
#
# If you want to cite an online resourse (website etc)
# you can use the 'online' format (see below)
#
# You can remove the examples below

@article{Batut2018,
doi = {10.1016/j.cels.2018.05.012},
url = {https://doi.org/10.1016/j.cels.2018.05.012},
year = {2018},
month = jun,
publisher = {Elsevier {BV}},
volume = {6},
number = {6},
pages = {752--758.e1},
author = {B{\'{e}}r{\'{e}}nice Batut and Saskia Hiltemann and Andrea Bagnacani and Dannon Baker and Vivek Bhardwaj and
Clemens Blank and Anthony Bretaudeau and Loraine Brillet-Gu{\'{e}}guen and Martin {\v{C}}ech and John Chilton
and Dave Clements and Olivia Doppelt-Azeroual and Anika Erxleben and Mallory Ann Freeberg and Simon Gladman and
Youri Hoogstrate and Hans-Rudolf Hotz and Torsten Houwaart and Pratik Jagtap and Delphine Larivi{\`{e}}re and
Gildas Le Corguill{\'{e}} and Thomas Manke and Fabien Mareuil and Fidel Ram{\'{i}}rez and Devon Ryan and
Florian Christoph Sigloch and Nicola Soranzo and Joachim Wolff and Pavankumar Videm and Markus Wolfien and
Aisanjiang Wubuli and Dilmurat Yusuf and James Taylor and Rolf Backofen and Anton Nekrutenko and Bj\"{o}rn Gr\"{u}ning},
title = {Community-Driven Data Analysis Training for Biology},
journal = {Cell Systems}
}

@online{gtn-website,
author = {GTN community},
title = {GTN Training Materials: Collection of tutorials developed and maintained by the worldwide Galaxy community},
url = {https://training.galaxyproject.org},
urldate = {2021-03-24}
}
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