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Code refactoring #4

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Code refactoring #4

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e24bd29
use set intersection
tosemml Aug 28, 2023
89cfa72
fix type error
tosemml Sep 5, 2023
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4 changes: 2 additions & 2 deletions scSLAT/viz/multi_dataset.py
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Original file line number Diff line number Diff line change
Expand Up @@ -225,7 +225,7 @@ def __init__(self,dataset_A:pd.DataFrame,
set2 = list(set(self.dataset_B[meta]))
self.celltypes = set1 + [x for x in set2 if x not in set1]
self.celltypes.sort() # make sure celltypes are in the same order
overlap = [x for x in set2 if x in set1]
overlap = set(set2).intersection(set1)
print(f"dataset1: {len(set1)} cell types; dataset2: {len(set2)} cell types; \n\
Total :{len(self.celltypes)} celltypes; Overlap: {len(overlap)} cell types \n\
Not overlap :[{[y for y in (set1+set2) if y not in overlap]}]"
Expand Down Expand Up @@ -744,4 +744,4 @@ def matching_2d(matching:np.ndarray,

del src.obs['target_celltype']
del src.obs['target_region']
del src.obs['vis']
del src.obs['vis']