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Update WIP_standard_annot_ShEx #311

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Mar 19, 2024
Merged

Update WIP_standard_annot_ShEx #311

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46 changes: 23 additions & 23 deletions shapes/WIP_standard_annot_ShEx
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Original file line number Diff line number Diff line change
Expand Up @@ -456,19 +456,19 @@ PREFIX results_in_remodeling_of: <http://purl.obolibrary.org/obo/RO_0002591>

<ProteinContainingComplex> @<GoCamEntity> AND EXTRA a {
a @<ProteinContainingComplexClass>;
enables: ( @<MolecularFunction> OR @<RootMolecularFuntion> ) {0,1};
contributes_to: @<MolecularFunction> {0,1};
enables: ( @<MolecularFunction> OR @<RootMolecularFuntion> ) {0,1};
contributes_to: @<MolecularFunction> {0,1};
located_in: ( @<CellularAnatomicalEntity> OR @<VirionComponent> ) {0,1};
is_active_in: ( @<CellularAnatomicalEntity> OR @<RootCellularComponent> OR @VirionComponent> ) {0,1};
part_of: @<ProteinContainingComplex> *;
part_of: @<ProteinContainingComplex> *;
has_part: ( @<InformationBiomacromolecule> OR @<ProteinContainingComplex> ) *;
existence_overlaps: ( @<BiologicalProcess> OR @<LifeCycleStage> OR @<PlantStructureDevelopmentStage> ) *;
existence_starts_and_ends_during: ( @<BiologicalProcess> OR @<LifeCycleStage> OR @<PlantStructureDevelopmentStage> ) *;
involved_in: ( @<BiologicalProcess> OR @<RootBiologicalProcess> ) {0,1};
acts_upstream_of_negative_effect: @<BiologicalProcess> {0,1};
acts_upstream_of_positive_effect: @<BiologicalProcess> {0,1};
acts_upstream_of_or_within_negative_effect: @<BiologicalProcess> {0,1};
acts_upstream_of_or_within_positive_effect: @<BiologicalProcess> {0,1};
involved_in: ( @<BiologicalProcess> OR @<RootBiologicalProcess> ) {0,1};
acts_upstream_of_negative_effect: @<BiologicalProcess> {0,1};
acts_upstream_of_positive_effect: @<BiologicalProcess> {0,1};
acts_upstream_of_or_within_negative_effect: @<BiologicalProcess> {0,1};
acts_upstream_of_or_within_positive_effect: @<BiologicalProcess> {0,1};
} // rdfs:comment "a protein complex"

<ProteinContainingComplexClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
Expand All @@ -480,33 +480,33 @@ PREFIX results_in_remodeling_of: <http://purl.obolibrary.org/obo/RO_0002591>
}
<Protein> @<ChemicalEntity> AND EXTRA a {
a @<ProteinClass> ;
enables: ( @<MolecularFunction> OR @<RootMolecularFuntion> ) {0,1};
contributes_to: @<MolecularFunction> {0,1};
enables: ( @<MolecularFunction> OR @<RootMolecularFuntion> ) {0,1};
contributes_to: @<MolecularFunction> {0,1};
located_in: ( @<CellularAnatomicalEntity> OR @<VirionComponent> ) {0,1};
is_active_in: ( @<CellularAnatomicalEntity> OR @<VirionComponent> OR @<RootCellularComponent> ) {0,1};
part_of: @<ProteinContainingComplex> {0,1};
involved_in: ( @<BiologicalProcess> OR @<RootBiologicalProcess> ) {0,1};
acts_upstream_of_negative_effect: @<BiologicalProcess> {0,1};
acts_upstream_of_positive_effect: @<BiologicalProcess> {0,1};
acts_upstream_of_or_within_negative_effect: @<BiologicalProcess> {0,1};
acts_upstream_of_or_within_positive_effect: @<BiologicalProcess> {0,1};
involved_in: ( @<BiologicalProcess> OR @<RootBiologicalProcess> ) {0,1};
acts_upstream_of_negative_effect: @<BiologicalProcess> {0,1};
acts_upstream_of_positive_effect: @<BiologicalProcess> {0,1};
acts_upstream_of_or_within_negative_effect: @<BiologicalProcess> {0,1};
acts_upstream_of_or_within_positive_effect: @<BiologicalProcess> {0,1};
}// rdfs:comment "a protein"

<InformationBiomacromoleculeClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
rdfs:subClassOf [ GoInformationBiomacromolecule: ];
}
<InformationBiomacromolecule> @<ChemicalEntity> AND EXTRA a {
a @<InformationBiomacromoleculeClass> +;
enables: ( @<MolecularFunction> OR @<RootMolecularFuntion> ) {0,1};
contributes_to: @<MolecularFunction> {0,1};
a @<InformationBiomacromoleculeClass> +;
enables: ( @<MolecularFunction> OR @<RootMolecularFuntion> ) {0,1};
contributes_to: @<MolecularFunction> {0,1};
located_in: ( @<CellularAnatomicalEntity> OR @<VirionComponent> ) {0,1};
is_active_in: ( @<CellularAnatomicalEntity> OR @<VirionComponent> OR @<RootCellularComponent> ) {0,1};
part_of: @<ProteinContainingComplex> {0,1};
involved_in: ( @<BiologicalProcess> OR @<RootBiologicalProcess> ) {0,1};
acts_upstream_of_negative_effect: @<BiologicalProcess> {0,1};
acts_upstream_of_positive_effect: @<BiologicalProcess> {0,1};
acts_upstream_of_or_within_negative_effect: @<BiologicalProcess> {0,1};
acts_upstream_of_or_within_positive_effect: @<BiologicalProcess> {0,1};
involved_in: ( @<BiologicalProcess> OR @<RootBiologicalProcess> ) {0,1};
acts_upstream_of_negative_effect: @<BiologicalProcess> {0,1};
acts_upstream_of_positive_effect: @<BiologicalProcess> {0,1};
acts_upstream_of_or_within_negative_effect: @<BiologicalProcess> {0,1};
acts_upstream_of_or_within_positive_effect: @<BiologicalProcess> {0,1};
}// rdfs:comment "an information biomacromolecule - e.g. a protein or RNA product"

<EvidenceClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
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