Releases: genome/bam-readcount
v1.0.1 Release
This release fixes:
Correct version is now reported with --version (only works with cloned source:
git clone -b v1.0.1 --single-branch [email protected]:genome/bam-readcount)
Usage message now includes cram_file as well as bam_file
The reviewers of the bam-readcount paper (in submission) had many thoughtful
suggestions for improving README.md and their comments also led to a new hands-on
tutorial for this release. Thank you!
v1.0.0 Release
This release features:
- Switch to samtools-1.10, adding speed and CRAM support
- Docker image
- Documentation updates
Many people contributed ideas and testing. Thank you!
v0.8.0 Release
This release features:
- A major bug fix where indels may not be counted correctly.
- Some changes to simplify the build process and make it more correct.(Thanks @tabbott)
- Documentation updates. (Thanks @morgantaschuk)
- A bug fix to prevent a segmentation fault when the input file is missing. (Thanks to @sambrightman)
- A reduction in the default number of warnings. It no longer spills out millions of warnings by default with modern BAM files.
- An MIT license.
v0.7.4 Release
This release fixes some minor issues with executable naming when making a package. The executable is now correctly deployed as bam-readcount0.7 (as opposed to bam-readcount0.7.x)
v0.7.3 Release
This release incorrectly fixes some minor issues with executable naming when making a package. Please use v0.7.4 instead.
v0.7.2 Release
This is a bug-fix release addressing an edge-case that can result in no deletion counts being reported after a certain chromosome.
v0.7.0 release
v0.7.0 release