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Run RANK_VARIANTS per family #276

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fellen31 opened this issue Jul 25, 2024 · 1 comment · May be fixed by #502
Open

Run RANK_VARIANTS per family #276

fellen31 opened this issue Jul 25, 2024 · 1 comment · May be fixed by #502
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@fellen31
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0.4

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Description of feature

Running a large-ish VCF with 12 samples across all chromosomes takes > 200 GB RAM.

Running (all or some part of) RANK_VARIANTS per family should be alright.
@fellen31 fellen31 added the enhancement New feature or request label Jul 25, 2024
@fellen31 fellen31 added Gain M Gain Medium Effort M Effort Medium Urgency M Urgency Medium Urgency S Urgency Small and removed enhancement New feature or request Urgency M Urgency Medium labels Jul 26, 2024
@fellen31 fellen31 mentioned this issue Aug 5, 2024
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Also Clinical-Genomics/genmod#148

@fellen31 fellen31 added Urgency L Urgency Large and removed Urgency S Urgency Small labels Nov 11, 2024
@fellen31 fellen31 added this to the 0.4 milestone Nov 11, 2024
@fellen31 fellen31 self-assigned this Nov 11, 2024
@fellen31 fellen31 moved this to Ready in Nallo Nov 11, 2024
@fellen31 fellen31 linked a pull request Nov 12, 2024 that will close this issue
Annotate and rank SNVs per family #502
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10 tasks
@fellen31 fellen31 linked a pull request Nov 12, 2024 that will close this issue
Open
10 tasks
@fellen31 fellen31 moved this from Ready to In review in Nallo Nov 14, 2024
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@fellen31 fellen31

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Nallo
Status: In review
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0.4
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Annotate and rank SNVs per family fellen31/skierfe
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@fellen31