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Add test environment file; Add new GitHub action
docs/environment_files/testing.yml - Add this new environment file, based on the environment.yml file, but without pegged version numbers for most packages. .github/workflows/build-test-environment.yml - YAML config file to start a new GitHub action to build the mamba environment from "testing.yml" .github/workflows/build-gcpy-environment.yml - Updated names and comments - Now read docs/environment_files/environment.yml CHANGEKOG.md - Updated accordingly Signed-off-by: Bob Yantosca <[email protected]>
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,38 @@ | ||
| --- | ||
| # | ||
| # GitHub action to build the GCPy test environment with micromamba | ||
| # See: https://github.com/marketplace/actions/setup-micromamba | ||
| # | ||
| name: build-test-environment | ||
|
|
||
| on: | ||
| push: | ||
| branches: [ "main", "dev" ] | ||
| pull_request: | ||
| # The branches below must be a subset of the branches above | ||
| branches: [ "main", "dev" ] | ||
|
|
||
| jobs: | ||
| build: | ||
| runs-on: ubuntu-latest | ||
| strategy: | ||
| matrix: | ||
| python-version: ["3.9"] | ||
| steps: | ||
| - name: Checkout the GCPy repository | ||
| uses: actions/checkout@v2 | ||
| - name: Create "testing" environment | ||
| uses: mamba-org/setup-micromamba@v1 | ||
| with: | ||
| micromamba-version: 'latest' | ||
| environment-file: docs/environment_files/testing.yml | ||
| init-shell: bash | ||
| cache-environment: true | ||
| generate-run-shell: true | ||
| post-cleanup: 'all' | ||
| - name: Test if "import gcpy" works | ||
| run: python -c "import gcpy" | ||
| shell: micromamba-shell {0} | ||
| - name: Test if we can create a plot | ||
| run: python -m gcpy.examples.plotting.create_test_plot | ||
| shell: micromamba-shell {0} |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,49 @@ | ||
| --- | ||
| # ====================================================================== | ||
| # GCPy testing environment file. | ||
| # Intended to be used by the GCST for testing purposes. | ||
| # | ||
| # GCPy users should build the environmet from "environment.yml", | ||
| # as this will specify package versions that are known to work. | ||
| # See: https://github.com/geoschem/gcpy/issues/284 | ||
| # ====================================================================== | ||
| name: testing | ||
| channels: | ||
| - conda-forge | ||
| - nodefaults | ||
| dependencies: | ||
| - awscli # Utilities for AWS cloud | ||
| - cartopy # Geospatial data processing | ||
| - cf_xarray # CF conventions for xarray | ||
| - dask # Parallel library; backend for xarray | ||
| - gridspec # Define Earth System Model grids | ||
| - ipython # Interactive Python (used by Jupyter) | ||
| - joblib # Parallelize python code | ||
| - jupyter # Jupyter Notebook | ||
| - matplotlib # Creates plots and visualizations | ||
| - netcdf4 # Python wrapper for netCDF | ||
| - netcdf-fortran # Python wrapper for netCDF-Fortran | ||
| - numpy # Optimized mathematical functions | ||
| - pandas # Tables/timeseries manipulation | ||
| - pip # Install packages from PyPi | ||
| - pylint # Python linter | ||
| - pyproj # Python map projections library | ||
| - python # Any python version prior to 3.10 | ||
| - pypdf # PDF utilities (bookmarks, etc.) | ||
| - recommonmark # Dependency for Sphinx | ||
| - requests # HTTP library | ||
| - scipy # Scientific python package | ||
| - sparselt # Regridding earth system model data | ||
| - tabulate # Pretty-printing for column data | ||
| - tk # Tcl/tk library | ||
| - xarray # Read data from netCDF etc files | ||
| - esmf==8.1.1 # Earth system modeling framework | ||
| - esmpy==8.1.1 # Python wrapper for ESMF | ||
| - xesmf==0.5.1 # Universal regridder | ||
| - docutils # Convert text to other formats | ||
| - jinja2 # Dependency for Sphinx | ||
| - sphinx # Generate ReadTheDocs output | ||
| - sphinx-autoapi # Sphinx autodoc style documentation | ||
| - sphinx-autobuild # Build ReadTheDos live in browser | ||
| - sphinxcontrib-bibtex # ReadTheDocs bibliography style | ||
| - sphinx_rtd_theme # ReadTheDocs HTML theme files |