Skip to content

Commit

Permalink
- CHG: Removed chemical compounds template as it has been merged with…
Browse files Browse the repository at this point in the history
… trials.

- CHG: Updated image template to remove compound references.
  • Loading branch information
sebastian-raubach committed Oct 6, 2022
1 parent 0b0be01 commit 3d16ad6
Show file tree
Hide file tree
Showing 7 changed files with 2 additions and 31 deletions.
29 changes: 0 additions & 29 deletions chemical-compound-data/README.md

This file was deleted.

Binary file removed chemical-compound-data/compound-data.xlsx
Binary file not shown.
Binary file removed chemical-compound-data/example-compound-data.xlsx
Binary file not shown.
4 changes: 2 additions & 2 deletions images/README.md
Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
# Image data
Images can be associated with germplasm, traits and chemical compounds. While you can upload images through the Germinate web interface, sometimes it's easier to bulk-upload them using our data templates.
Images can be associated with germplasm and traits. While you can upload images through the Germinate web interface, sometimes it's easier to bulk-upload them using our data templates.

The data template used for image data upload is slightly different from most other templates in that it has to be zipped up (in [ZIP](https://en.wikipedia.org/wiki/ZIP_(file_format)) format) together with the images that should be uploaded. So all you are uploading is a single `.zip` file containing the template file (which HAS to be called `images.xlsx`) and all the images without any subfolders.

Expand All @@ -9,7 +9,7 @@ Here is an explanation of each column:

- `Reference Id`: The database Reference id of the item you are referencing, e.g. if your `Image reference type` is `germplasm`, then this is the `germinatebase.id`.
- `Reference Name`: Alternatively to the `Id`, the `Reference Name` can be specified. As an example, if you are referencing a `germplasm`, then this has to correspond to the MCPD `ACCENUMB`.
- `Image reference type`: This is one of the following, depending on what the image shows: `germinatebase` (for germplasm), `phenotypes` (for traits) or `compounds`.
- `Image reference type`: This is one of the following, depending on what the image shows: `germinatebase` (for germplasm) or `phenotypes` (for traits).
- `Image filename`: The file name of the image. This does not include the path, just the filename including the extension, e.g. `P1031523.JPG`.
- `Image description`: An optional description of what the image shows. This can, for example, contain credit information.
- `Tags`: A comma-separated list of tags that should be associated with this image. We recommend using all-lowercase tags with dashes instead of spaces, e.g. `flower` or `whole-plant`.
Binary file modified images/example-images.xlsx
Binary file not shown.
Binary file modified images/example-images.zip
Binary file not shown.
Binary file modified images/images.xlsx
Binary file not shown.

0 comments on commit 3d16ad6

Please sign in to comment.