Merge branch 'main' into update-contributors

.github/dependabot.yml

@@ -3,7 +3,21 @@ updates:
 - package-ecosystem: pip
   directory: "/"
   schedule:
-    interval: monthly
-  open-pull-requests-limit: 10
+    interval: "weekly"
+    time: "07:00"
+    timezone: "EST5EDT"
+  open-pull-requests-limit: 2
   reviewers:
     - glotzerlab/signac-maintainers
+- package-ecosystem: "github-actions"
+  directory: "/"
+  target-branch: main
+  schedule:
+    interval: "weekly"
+    time: "07:00"
+    timezone: "EST5EDT"
+  pull-request-branch-name:
+    separator: "-"
+  reviewers:
+    - glotzerlab/signac-maintainers
+  open-pull-requests-limit: 2

.github/workflows/publish-packages.yml

@@ -17,9 +17,9 @@ jobs:
     runs-on: ubuntu-latest
     steps:
     - name: Check out repo
-      uses: actions/checkout@v3
+      uses: actions/checkout@v4
     - name: Set up Python
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v5
       with:
         python-version: "3.11"
     - name: Install dependencies
@@ -44,7 +44,7 @@ jobs:
       run:
         python -m pytest -v tests/
     - name: Upload artifact
-      uses: actions/upload-artifact@v3
+      uses: actions/upload-artifact@v4
       with:
           name: release
           path: dist/
@@ -54,7 +54,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Download artifact
-        uses: actions/download-artifact@v3
+        uses: actions/download-artifact@v4
         with:
             name: release
             path: dist/

.github/workflows/run-pytest.yml

@@ -52,16 +52,16 @@ jobs:
             os: 'ubuntu-latest'
             python: '3.12'
             dependencies: 'minimal'
-          - os: 'macos-latest'
+          - os: 'macos-14'
             python: '3.12'
             dependencies: 'minimal'
           - os: 'windows-latest'
             python: '3.12'
             dependencies: 'minimal'
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
     - name: Set up Python ${{ matrix.python }}
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v5
       with:
         python-version: ${{ matrix.python }}
     - name: Install newest dependencies
@@ -87,6 +87,6 @@ jobs:
     - name: Test with pytest
       run: |
         pytest --cov=signac --cov-config=pyproject.toml --cov-report=xml tests/ -v
-    - uses: codecov/codecov-action@v3
+    - uses: codecov/codecov-action@v4
       with:
         token: ${{ secrets.CODECOV_TOKEN }}

README.md

@@ -22,8 +22,10 @@ This makes it easier to operate on large data spaces, streamlines post-processin
   Examples, tutorials, topic guides, and package Python APIs.
 - [Package documentation](https://docs.signac.io/projects/core/):
   API reference for the **signac** package.
-- [Slack Chat Support](https://signac.io/slack-invite/):
-  Get help and ask questions on the **signac** Slack workspace.
+- [Discussion board](https://github.com/glotzerlab/signac/discussions/):
+  Ask the **signac** user community for help.
+- [Slack workspace](https://signac.io/slack-invite/):
+  Chat about **signac**.
 - [**signac** website](https://signac.io/):
   Framework overview and news.
 

changelog.txt

@@ -27,6 +27,11 @@ Fixed
 
  - Fixed parsing of ``$not`` query expressions on command line (#970).
 
+Removed
++++++++
+
+ - Unused ``ruamel.yaml`` dependency (#981).
+
 [2.1.0] -- 2023-07-12
 ---------------------
 

requirements/requirements-test-optional.txt

@@ -1,5 +1,4 @@
 h5py==3.10.0; implementation_name=='cpython'
-numpy==1.26.3
+numpy==1.26.4
 pandas==2.2.0; implementation_name=='cpython'
-ruamel.yaml==0.18.5
 tables==3.9.2; implementation_name=='cpython'