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Bump Python in Colab to 3.11.
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PiperOrigin-RevId: 718812632
Change-Id: I54b901e7a361a63a2c3f366535dbe2cd3e792b99
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Augustin-Zidek authored and copybara-github committed Jan 23, 2025
1 parent fa0c526 commit 11a991e
Showing 1 changed file with 4 additions and 4 deletions.
8 changes: 4 additions & 4 deletions notebooks/AlphaFold.ipynb
Original file line number Diff line number Diff line change
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" %env PATH=/opt/conda/bin:{PATH}\n",
" %shell conda install -qy conda==24.11.1 \\\n",
" \u0026\u0026 conda install -qy -c conda-forge \\\n",
" python=3.10 \\\n",
" python=3.11 \\\n",
" openmm=8.0.0 \\\n",
" pdbfixer\n",
" pbar.update(80)\n",
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" # Make sure stereo_chemical_props.txt is in all locations where it could be searched for.\n",
" %shell mkdir -p /content/alphafold/alphafold/common\n",
" %shell cp -f /content/stereo_chemical_props.txt /content/alphafold/alphafold/common\n",
" %shell mkdir -p /opt/conda/lib/python3.10/site-packages/alphafold/common/\n",
" %shell cp -f /content/stereo_chemical_props.txt /opt/conda/lib/python3.10/site-packages/alphafold/common/\n",
" %shell mkdir -p /opt/conda/lib/python3.11/site-packages/alphafold/common/\n",
" %shell cp -f /content/stereo_chemical_props.txt /opt/conda/lib/python3.11/site-packages/alphafold/common/\n",
"\n",
" # Load parameters\n",
" %shell mkdir --parents \"{PARAMS_DIR}\"\n",
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"\n",
"# Make sure everything we need is on the path.\n",
"import sys\n",
"sys.path.append('/opt/conda/lib/python3.10/site-packages')\n",
"sys.path.append('/opt/conda/lib/python3.11/site-packages')\n",
"sys.path.append('/content/alphafold')\n",
"\n",
"executed_cells.add(2)"
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