cleaning up directory structure

gpgpu-sim · Jul 28, 2012 · e950311 · e950311
1 parent aa63b43
commit e950311
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Showing 375 changed files with 146 additions and 99 deletions.
diff --git a/benchmarks/CUDA/AES/Makefile → AES/Makefile b/benchmarks/CUDA/AES/Makefile → AES/Makefile
@@ -50,4 +50,4 @@ CUFLAGS	:= $(CFLAGS)
 ###############################################################################
 # Rules and targets
 
-include ../../../common/common.mk
+include ../../common/common.mk
diff --git a/AES/README.GPGPU-Sim b/AES/README.GPGPU-Sim
@@ -0,0 +1 @@
+../bin/release/AES  e 128 ./data/output.bmp ./data/key128.txt
diff --git a/benchmarks/CUDA/AES/aesCudaUtils.cpp → AES/aesCudaUtils.cpp b/benchmarks/CUDA/AES/aesCudaUtils.cpp → AES/aesCudaUtils.cpp
diff --git a/benchmarks/CUDA/AES/aesCudaUtils.h → AES/aesCudaUtils.h b/benchmarks/CUDA/AES/aesCudaUtils.h → AES/aesCudaUtils.h
diff --git a/benchmarks/CUDA/AES/aesDecrypt128_kernel.h → AES/aesDecrypt128_kernel.h b/benchmarks/CUDA/AES/aesDecrypt128_kernel.h → AES/aesDecrypt128_kernel.h
diff --git a/benchmarks/CUDA/AES/aesDecrypt256_kernel.h → AES/aesDecrypt256_kernel.h b/benchmarks/CUDA/AES/aesDecrypt256_kernel.h → AES/aesDecrypt256_kernel.h
diff --git a/benchmarks/CUDA/AES/aesEncrypt128_kernel.h → AES/aesEncrypt128_kernel.h b/benchmarks/CUDA/AES/aesEncrypt128_kernel.h → AES/aesEncrypt128_kernel.h
diff --git a/benchmarks/CUDA/AES/aesEncrypt256_kernel.h → AES/aesEncrypt256_kernel.h b/benchmarks/CUDA/AES/aesEncrypt256_kernel.h → AES/aesEncrypt256_kernel.h
diff --git a/benchmarks/CUDA/AES/aesHost.cu → AES/aesHost.cu b/benchmarks/CUDA/AES/aesHost.cu → AES/aesHost.cu
diff --git a/benchmarks/CUDA/AES/aescuda.cpp → AES/aescuda.cpp b/benchmarks/CUDA/AES/aescuda.cpp → AES/aescuda.cpp
diff --git a/benchmarks/CUDA/AES/data/key.txt → AES/data/key.txt b/benchmarks/CUDA/AES/data/key.txt → AES/data/key.txt
diff --git a/benchmarks/CUDA/AES/data/key128.txt → AES/data/key128.txt b/benchmarks/CUDA/AES/data/key128.txt → AES/data/key128.txt
diff --git a/benchmarks/CUDA/AES/data/key256.txt → AES/data/key256.txt b/benchmarks/CUDA/AES/data/key256.txt → AES/data/key256.txt
diff --git a/benchmarks/CUDA/AES/data/output.bmp → AES/data/output.bmp b/benchmarks/CUDA/AES/data/output.bmp → AES/data/output.bmp
diff --git a/benchmarks/CUDA/AES/sbox_D.h → AES/sbox_D.h b/benchmarks/CUDA/AES/sbox_D.h → AES/sbox_D.h
diff --git a/benchmarks/CUDA/AES/sbox_E.h → AES/sbox_E.h b/benchmarks/CUDA/AES/sbox_E.h → AES/sbox_E.h
diff --git a/benchmarks/CUDA/AES/utilsBox.h → AES/utilsBox.h b/benchmarks/CUDA/AES/utilsBox.h → AES/utilsBox.h
diff --git a/benchmarks/CUDA/BFS/Makefile → BFS/Makefile b/benchmarks/CUDA/BFS/Makefile → BFS/Makefile
@@ -43,5 +43,5 @@ CCFILES		:=
 ################################################################################
 # Rules and targets
 
-include ../../../common/common.mk
+include ../../common/common.mk
 
diff --git a/BFS/README.GPGPU-Sim b/BFS/README.GPGPU-Sim
@@ -0,0 +1 @@
+../bin/release/BFS ./data/graph65536.txt
diff --git a/benchmarks/CUDA/BFS/ReadMe.txt → BFS/ReadMe.txt b/benchmarks/CUDA/BFS/ReadMe.txt → BFS/ReadMe.txt
diff --git a/benchmarks/CUDA/BFS/SampleGraph.jpg → BFS/SampleGraph.jpg b/benchmarks/CUDA/BFS/SampleGraph.jpg → BFS/SampleGraph.jpg
diff --git a/benchmarks/CUDA/BFS/bfs.cu → BFS/bfs.cu b/benchmarks/CUDA/BFS/bfs.cu → BFS/bfs.cu
diff --git a/benchmarks/CUDA/BFS/data/GraphFormat.txt → BFS/data/GraphFormat.txt b/benchmarks/CUDA/BFS/data/GraphFormat.txt → BFS/data/GraphFormat.txt
diff --git a/benchmarks/CUDA/BFS/data/SampleGraph.txt → BFS/data/SampleGraph.txt b/benchmarks/CUDA/BFS/data/SampleGraph.txt → BFS/data/SampleGraph.txt
diff --git a/benchmarks/CUDA/BFS/data/graph4096.txt → BFS/data/graph4096.txt b/benchmarks/CUDA/BFS/data/graph4096.txt → BFS/data/graph4096.txt
diff --git a/benchmarks/CUDA/BFS/data/graph65536.txt → BFS/data/graph65536.txt b/benchmarks/CUDA/BFS/data/graph65536.txt → BFS/data/graph65536.txt
diff --git a/...arks/CUDA/BFS/data/result_SampleGraph.txt → BFS/data/result_SampleGraph.txt b/...arks/CUDA/BFS/data/result_SampleGraph.txt → BFS/data/result_SampleGraph.txt
diff --git a/benchmarks/CUDA/BFS/kernel.cu → BFS/kernel.cu b/benchmarks/CUDA/BFS/kernel.cu → BFS/kernel.cu
diff --git a/benchmarks/CUDA/CP/README.GPGPU-Sim → CP/README.GPGPU-Sim b/benchmarks/CUDA/CP/README.GPGPU-Sim → CP/README.GPGPU-Sim
diff --git a/benchmarks/CUDA/CP/benchmarks/cp/DESCRIPTION → CP/benchmarks/cp/DESCRIPTION b/benchmarks/CUDA/CP/benchmarks/cp/DESCRIPTION → CP/benchmarks/cp/DESCRIPTION
diff --git a/...marks/cp/build/cuda_short/gpgpusim.config → ...marks/cp/build/cuda_short/gpgpusim.config b/...marks/cp/build/cuda_short/gpgpusim.config → ...marks/cp/build/cuda_short/gpgpusim.config
diff --git a/...DA/CP/benchmarks/cp/build/cuda_short/mesh → CP/benchmarks/cp/build/cuda_short/mesh b/...DA/CP/benchmarks/cp/build/cuda_short/mesh → CP/benchmarks/cp/build/cuda_short/mesh
diff --git a/...A/CP/benchmarks/cp/output/default/ref.txt → CP/benchmarks/cp/output/default/ref.txt b/...A/CP/benchmarks/cp/output/default/ref.txt → CP/benchmarks/cp/output/default/ref.txt
diff --git a/...UDA/CP/benchmarks/cp/output/short/ref.txt → CP/benchmarks/cp/output/short/ref.txt b/...UDA/CP/benchmarks/cp/output/short/ref.txt → CP/benchmarks/cp/output/short/ref.txt
diff --git a/...UDA/CP/benchmarks/cp/output/small/ref.txt → CP/benchmarks/cp/output/small/ref.txt b/...UDA/CP/benchmarks/cp/output/small/ref.txt → CP/benchmarks/cp/output/small/ref.txt
diff --git a/...s/CUDA/CP/benchmarks/cp/src/base/Makefile → CP/benchmarks/cp/src/base/Makefile b/...s/CUDA/CP/benchmarks/cp/src/base/Makefile → CP/benchmarks/cp/src/base/Makefile
diff --git a/.../CUDA/CP/benchmarks/cp/src/base/cenergy.c → CP/benchmarks/cp/src/base/cenergy.c b/.../CUDA/CP/benchmarks/cp/src/base/cenergy.c → CP/benchmarks/cp/src/base/cenergy.c
diff --git a/.../CUDA/CP/benchmarks/cp/src/base/cenergy.h → CP/benchmarks/cp/src/base/cenergy.h b/.../CUDA/CP/benchmarks/cp/src/base/cenergy.h → CP/benchmarks/cp/src/base/cenergy.h
diff --git a/...rks/CUDA/CP/benchmarks/cp/src/base/main.c → CP/benchmarks/cp/src/base/main.c b/...rks/CUDA/CP/benchmarks/cp/src/base/main.c → CP/benchmarks/cp/src/base/main.c
diff --git a/.../CUDA/CP/benchmarks/cp/src/base/structs.h → CP/benchmarks/cp/src/base/structs.h b/.../CUDA/CP/benchmarks/cp/src/base/structs.h → CP/benchmarks/cp/src/base/structs.h
diff --git a/...ks/CUDA/CP/benchmarks/cp/src/cpu/Makefile → CP/benchmarks/cp/src/cpu/Makefile b/...ks/CUDA/CP/benchmarks/cp/src/cpu/Makefile → CP/benchmarks/cp/src/cpu/Makefile
diff --git a/...s/CUDA/CP/benchmarks/cp/src/cpu/cenergy.c → CP/benchmarks/cp/src/cpu/cenergy.c b/...s/CUDA/CP/benchmarks/cp/src/cpu/cenergy.c → CP/benchmarks/cp/src/cpu/cenergy.c
diff --git a/...s/CUDA/CP/benchmarks/cp/src/cpu/cenergy.h → CP/benchmarks/cp/src/cpu/cenergy.h b/...s/CUDA/CP/benchmarks/cp/src/cpu/cenergy.h → CP/benchmarks/cp/src/cpu/cenergy.h
diff --git a/...arks/CUDA/CP/benchmarks/cp/src/cpu/main.c → CP/benchmarks/cp/src/cpu/main.c b/...arks/CUDA/CP/benchmarks/cp/src/cpu/main.c → CP/benchmarks/cp/src/cpu/main.c
diff --git a/...s/CUDA/CP/benchmarks/cp/src/cpu/structs.h → CP/benchmarks/cp/src/cpu/structs.h b/...s/CUDA/CP/benchmarks/cp/src/cpu/structs.h → CP/benchmarks/cp/src/cpu/structs.h
diff --git a/...s/CUDA/CP/benchmarks/cp/src/cuda/Makefile → CP/benchmarks/cp/src/cuda/Makefile b/...s/CUDA/CP/benchmarks/cp/src/cuda/Makefile → CP/benchmarks/cp/src/cuda/Makefile
diff --git a/...CUDA/CP/benchmarks/cp/src/cuda/cuenergy.h → CP/benchmarks/cp/src/cuda/cuenergy.h b/...CUDA/CP/benchmarks/cp/src/cuda/cuenergy.h → CP/benchmarks/cp/src/cuda/cuenergy.h
diff --git a/...rks/cp/src/cuda/cuenergy_pre8_coalesce.cu → ...rks/cp/src/cuda/cuenergy_pre8_coalesce.cu b/...rks/cp/src/cuda/cuenergy_pre8_coalesce.cu → ...rks/cp/src/cuda/cuenergy_pre8_coalesce.cu
diff --git a/...ks/CUDA/CP/benchmarks/cp/src/cuda/main.cu → CP/benchmarks/cp/src/cuda/main.cu b/...ks/CUDA/CP/benchmarks/cp/src/cuda/main.cu → CP/benchmarks/cp/src/cuda/main.cu
diff --git a/...A/CP/benchmarks/cp/src/cuda_base/Makefile → CP/benchmarks/cp/src/cuda_base/Makefile b/...A/CP/benchmarks/cp/src/cuda_base/Makefile → CP/benchmarks/cp/src/cuda_base/Makefile
diff --git a/...CP/benchmarks/cp/src/cuda_base/cuenergy.h → CP/benchmarks/cp/src/cuda_base/cuenergy.h b/...CP/benchmarks/cp/src/cuda_base/cuenergy.h → CP/benchmarks/cp/src/cuda_base/cuenergy.h
diff --git a/...nchmarks/cp/src/cuda_base/cuenergy_pre.cu → ...nchmarks/cp/src/cuda_base/cuenergy_pre.cu b/...nchmarks/cp/src/cuda_base/cuenergy_pre.cu → ...nchmarks/cp/src/cuda_base/cuenergy_pre.cu
diff --git a/...DA/CP/benchmarks/cp/src/cuda_base/main.cu → CP/benchmarks/cp/src/cuda_base/main.cu b/...DA/CP/benchmarks/cp/src/cuda_base/main.cu → CP/benchmarks/cp/src/cuda_base/main.cu
diff --git a/.../CP/benchmarks/cp/src/cuda_short/Makefile → CP/benchmarks/cp/src/cuda_short/Makefile b/.../CP/benchmarks/cp/src/cuda_short/Makefile → CP/benchmarks/cp/src/cuda_short/Makefile
diff --git a/...P/benchmarks/cp/src/cuda_short/cuenergy.h → CP/benchmarks/cp/src/cuda_short/cuenergy.h b/...P/benchmarks/cp/src/cuda_short/cuenergy.h → CP/benchmarks/cp/src/cuda_short/cuenergy.h
diff --git a/.../src/cuda_short/cuenergy_pre8_coalesce.cu → .../src/cuda_short/cuenergy_pre8_coalesce.cu b/.../src/cuda_short/cuenergy_pre8_coalesce.cu → .../src/cuda_short/cuenergy_pre8_coalesce.cu
diff --git a/...A/CP/benchmarks/cp/src/cuda_short/main.cu → CP/benchmarks/cp/src/cuda_short/main.cu b/...A/CP/benchmarks/cp/src/cuda_short/main.cu → CP/benchmarks/cp/src/cuda_short/main.cu
diff --git a/...UDA/CP/benchmarks/cp/tools/compare-output → CP/benchmarks/cp/tools/compare-output b/...UDA/CP/benchmarks/cp/tools/compare-output → CP/benchmarks/cp/tools/compare-output
diff --git a/benchmarks/CUDA/CP/common/include/parboil.h → CP/common/include/parboil.h b/benchmarks/CUDA/CP/common/include/parboil.h → CP/common/include/parboil.h
diff --git a/benchmarks/CUDA/CP/common/lib/.dummy.txt → CP/common/lib/.dummy.txt b/benchmarks/CUDA/CP/common/lib/.dummy.txt → CP/common/lib/.dummy.txt
diff --git a/benchmarks/CUDA/CP/common/mk/common.mk → CP/common/mk/common.mk b/benchmarks/CUDA/CP/common/mk/common.mk → CP/common/mk/common.mk
diff --git a/benchmarks/CUDA/CP/common/mk/cuda.mk → CP/common/mk/cuda.mk b/benchmarks/CUDA/CP/common/mk/cuda.mk → CP/common/mk/cuda.mk
diff --git a/benchmarks/CUDA/CP/common/mk/cuda_rules.mk → CP/common/mk/cuda_rules.mk b/benchmarks/CUDA/CP/common/mk/cuda_rules.mk → CP/common/mk/cuda_rules.mk
diff --git a/benchmarks/CUDA/CP/common/mk/rules.mk → CP/common/mk/rules.mk b/benchmarks/CUDA/CP/common/mk/rules.mk → CP/common/mk/rules.mk
diff --git a/...UDA/CP/common/python/binaryfilecompare.py → CP/common/python/binaryfilecompare.py b/...UDA/CP/common/python/binaryfilecompare.py → CP/common/python/binaryfilecompare.py
diff --git a/...arks/CUDA/CP/common/python/filecompare.py → CP/common/python/filecompare.py b/...arks/CUDA/CP/common/python/filecompare.py → CP/common/python/filecompare.py
diff --git a/.../CUDA/CP/common/python/textfilecompare.py → CP/common/python/textfilecompare.py b/.../CUDA/CP/common/python/textfilecompare.py → CP/common/python/textfilecompare.py
diff --git a/benchmarks/CUDA/CP/common/src/Makefile → CP/common/src/Makefile b/benchmarks/CUDA/CP/common/src/Makefile → CP/common/src/Makefile
diff --git a/benchmarks/CUDA/CP/common/src/parboil.c → CP/common/src/parboil.c b/benchmarks/CUDA/CP/common/src/parboil.c → CP/common/src/parboil.c
diff --git a/benchmarks/CUDA/CP/driver/__init__.py → CP/driver/__init__.py b/benchmarks/CUDA/CP/driver/__init__.py → CP/driver/__init__.py
diff --git a/benchmarks/CUDA/CP/driver/actions.py → CP/driver/actions.py b/benchmarks/CUDA/CP/driver/actions.py → CP/driver/actions.py
diff --git a/benchmarks/CUDA/CP/driver/benchmark.py → CP/driver/benchmark.py b/benchmarks/CUDA/CP/driver/benchmark.py → CP/driver/benchmark.py
diff --git a/benchmarks/CUDA/CP/driver/futures.py → CP/driver/futures.py b/benchmarks/CUDA/CP/driver/futures.py → CP/driver/futures.py
diff --git a/benchmarks/CUDA/CP/driver/globals.py → CP/driver/globals.py b/benchmarks/CUDA/CP/driver/globals.py → CP/driver/globals.py
diff --git a/benchmarks/CUDA/CP/driver/options.py → CP/driver/options.py b/benchmarks/CUDA/CP/driver/options.py → CP/driver/options.py
diff --git a/benchmarks/CUDA/CP/driver/process.py → CP/driver/process.py b/benchmarks/CUDA/CP/driver/process.py → CP/driver/process.py
diff --git a/benchmarks/CUDA/CP/driver/text.py → CP/driver/text.py b/benchmarks/CUDA/CP/driver/text.py → CP/driver/text.py
diff --git a/benchmarks/CUDA/CP/parboil → CP/parboil b/benchmarks/CUDA/CP/parboil → CP/parboil
diff --git a/...rks/CUDA/DG/3rdParty/ParMetis-3.1/CHANGES → DG/3rdParty/ParMetis-3.1/CHANGES b/...rks/CUDA/DG/3rdParty/ParMetis-3.1/CHANGES → DG/3rdParty/ParMetis-3.1/CHANGES
diff --git a/...s/CUDA/DG/3rdParty/ParMetis-3.1/COPYRIGHT → DG/3rdParty/ParMetis-3.1/COPYRIGHT b/...s/CUDA/DG/3rdParty/ParMetis-3.1/COPYRIGHT → DG/3rdParty/ParMetis-3.1/COPYRIGHT
diff --git a/...DA/DG/3rdParty/ParMetis-3.1/Graphs/README → DG/3rdParty/ParMetis-3.1/Graphs/README b/...DA/DG/3rdParty/ParMetis-3.1/Graphs/README → DG/3rdParty/ParMetis-3.1/Graphs/README
diff --git a/...rks/CUDA/DG/3rdParty/ParMetis-3.1/INSTALL → DG/3rdParty/ParMetis-3.1/INSTALL b/...rks/CUDA/DG/3rdParty/ParMetis-3.1/INSTALL → DG/3rdParty/ParMetis-3.1/INSTALL
diff --git a/...G/3rdParty/ParMetis-3.1/METISLib/Makefile → DG/3rdParty/ParMetis-3.1/METISLib/Makefile b/...G/3rdParty/ParMetis-3.1/METISLib/Makefile → DG/3rdParty/ParMetis-3.1/METISLib/Makefile
diff --git a/...ty/ParMetis-3.1/METISLib/NEW_checkgraph.c → ...ty/ParMetis-3.1/METISLib/NEW_checkgraph.c b/...ty/ParMetis-3.1/METISLib/NEW_checkgraph.c → ...ty/ParMetis-3.1/METISLib/NEW_checkgraph.c
diff --git a/...dParty/ParMetis-3.1/METISLib/NEW_memory.c → ...dParty/ParMetis-3.1/METISLib/NEW_memory.c b/...dParty/ParMetis-3.1/METISLib/NEW_memory.c → ...dParty/ParMetis-3.1/METISLib/NEW_memory.c
diff --git a/.../3rdParty/ParMetis-3.1/METISLib/NEW_mfm.c → DG/3rdParty/ParMetis-3.1/METISLib/NEW_mfm.c b/.../3rdParty/ParMetis-3.1/METISLib/NEW_mfm.c → DG/3rdParty/ParMetis-3.1/METISLib/NEW_mfm.c
diff --git a/...Party/ParMetis-3.1/METISLib/NEW_mrefine.c → ...Party/ParMetis-3.1/METISLib/NEW_mrefine.c b/...Party/ParMetis-3.1/METISLib/NEW_mrefine.c → ...Party/ParMetis-3.1/METISLib/NEW_mrefine.c
diff --git a/...arty/ParMetis-3.1/METISLib/NEW_parmetis.c → ...arty/ParMetis-3.1/METISLib/NEW_parmetis.c b/...arty/ParMetis-3.1/METISLib/NEW_parmetis.c → ...arty/ParMetis-3.1/METISLib/NEW_parmetis.c
diff --git a/...rdParty/ParMetis-3.1/METISLib/NEW_stats.c → ...rdParty/ParMetis-3.1/METISLib/NEW_stats.c b/...rdParty/ParMetis-3.1/METISLib/NEW_stats.c → ...rdParty/ParMetis-3.1/METISLib/NEW_stats.c
diff --git a/.../3rdParty/ParMetis-3.1/METISLib/balance.c → DG/3rdParty/ParMetis-3.1/METISLib/balance.c b/.../3rdParty/ParMetis-3.1/METISLib/balance.c → DG/3rdParty/ParMetis-3.1/METISLib/balance.c
diff --git a/...dParty/ParMetis-3.1/METISLib/bucketsort.c → ...dParty/ParMetis-3.1/METISLib/bucketsort.c b/...dParty/ParMetis-3.1/METISLib/bucketsort.c → ...dParty/ParMetis-3.1/METISLib/bucketsort.c
diff --git a/.../3rdParty/ParMetis-3.1/METISLib/ccgraph.c → DG/3rdParty/ParMetis-3.1/METISLib/ccgraph.c b/.../3rdParty/ParMetis-3.1/METISLib/ccgraph.c → DG/3rdParty/ParMetis-3.1/METISLib/ccgraph.c
diff --git a/...dParty/ParMetis-3.1/METISLib/checkgraph.c → ...dParty/ParMetis-3.1/METISLib/checkgraph.c b/...dParty/ParMetis-3.1/METISLib/checkgraph.c → ...dParty/ParMetis-3.1/METISLib/checkgraph.c
diff --git a/.../3rdParty/ParMetis-3.1/METISLib/coarsen.c → DG/3rdParty/ParMetis-3.1/METISLib/coarsen.c b/.../3rdParty/ParMetis-3.1/METISLib/coarsen.c → DG/3rdParty/ParMetis-3.1/METISLib/coarsen.c
diff --git a/...3rdParty/ParMetis-3.1/METISLib/compress.c → DG/3rdParty/ParMetis-3.1/METISLib/compress.c b/...3rdParty/ParMetis-3.1/METISLib/compress.c → DG/3rdParty/ParMetis-3.1/METISLib/compress.c
diff --git a/...DG/3rdParty/ParMetis-3.1/METISLib/debug.c → DG/3rdParty/ParMetis-3.1/METISLib/debug.c b/...DG/3rdParty/ParMetis-3.1/METISLib/debug.c → DG/3rdParty/ParMetis-3.1/METISLib/debug.c
diff --git a/.../DG/3rdParty/ParMetis-3.1/METISLib/defs.h → DG/3rdParty/ParMetis-3.1/METISLib/defs.h b/.../DG/3rdParty/ParMetis-3.1/METISLib/defs.h → DG/3rdParty/ParMetis-3.1/METISLib/defs.h
diff --git a/...G/3rdParty/ParMetis-3.1/METISLib/estmem.c → DG/3rdParty/ParMetis-3.1/METISLib/estmem.c b/...G/3rdParty/ParMetis-3.1/METISLib/estmem.c → DG/3rdParty/ParMetis-3.1/METISLib/estmem.c
diff --git a/...DA/DG/3rdParty/ParMetis-3.1/METISLib/fm.c → DG/3rdParty/ParMetis-3.1/METISLib/fm.c b/...DA/DG/3rdParty/ParMetis-3.1/METISLib/fm.c → DG/3rdParty/ParMetis-3.1/METISLib/fm.c
diff --git a/.../3rdParty/ParMetis-3.1/METISLib/fortran.c → DG/3rdParty/ParMetis-3.1/METISLib/fortran.c b/.../3rdParty/ParMetis-3.1/METISLib/fortran.c → DG/3rdParty/ParMetis-3.1/METISLib/fortran.c
diff --git a/.../3rdParty/ParMetis-3.1/METISLib/frename.c → DG/3rdParty/ParMetis-3.1/METISLib/frename.c b/.../3rdParty/ParMetis-3.1/METISLib/frename.c → DG/3rdParty/ParMetis-3.1/METISLib/frename.c
diff --git a/...DG/3rdParty/ParMetis-3.1/METISLib/graph.c → DG/3rdParty/ParMetis-3.1/METISLib/graph.c b/...DG/3rdParty/ParMetis-3.1/METISLib/graph.c → DG/3rdParty/ParMetis-3.1/METISLib/graph.c
diff --git a/...3rdParty/ParMetis-3.1/METISLib/initpart.c → DG/3rdParty/ParMetis-3.1/METISLib/initpart.c b/...3rdParty/ParMetis-3.1/METISLib/initpart.c → DG/3rdParty/ParMetis-3.1/METISLib/initpart.c
diff --git a/...G/3rdParty/ParMetis-3.1/METISLib/kmetis.c → DG/3rdParty/ParMetis-3.1/METISLib/kmetis.c b/...G/3rdParty/ParMetis-3.1/METISLib/kmetis.c → DG/3rdParty/ParMetis-3.1/METISLib/kmetis.c
diff --git a/.../3rdParty/ParMetis-3.1/METISLib/kvmetis.c → DG/3rdParty/ParMetis-3.1/METISLib/kvmetis.c b/.../3rdParty/ParMetis-3.1/METISLib/kvmetis.c → DG/3rdParty/ParMetis-3.1/METISLib/kvmetis.c
diff --git a/...G/3rdParty/ParMetis-3.1/METISLib/kwayfm.c → DG/3rdParty/ParMetis-3.1/METISLib/kwayfm.c b/...G/3rdParty/ParMetis-3.1/METISLib/kwayfm.c → DG/3rdParty/ParMetis-3.1/METISLib/kwayfm.c
diff --git a/...dParty/ParMetis-3.1/METISLib/kwayrefine.c → ...dParty/ParMetis-3.1/METISLib/kwayrefine.c b/...dParty/ParMetis-3.1/METISLib/kwayrefine.c → ...dParty/ParMetis-3.1/METISLib/kwayrefine.c
diff --git a/...rdParty/ParMetis-3.1/METISLib/kwayvolfm.c → ...rdParty/ParMetis-3.1/METISLib/kwayvolfm.c b/...rdParty/ParMetis-3.1/METISLib/kwayvolfm.c → ...rdParty/ParMetis-3.1/METISLib/kwayvolfm.c
diff --git a/...rty/ParMetis-3.1/METISLib/kwayvolrefine.c → ...rty/ParMetis-3.1/METISLib/kwayvolrefine.c b/...rty/ParMetis-3.1/METISLib/kwayvolrefine.c → ...rty/ParMetis-3.1/METISLib/kwayvolrefine.c
diff --git a/...G/3rdParty/ParMetis-3.1/METISLib/macros.h → DG/3rdParty/ParMetis-3.1/METISLib/macros.h b/...G/3rdParty/ParMetis-3.1/METISLib/macros.h → DG/3rdParty/ParMetis-3.1/METISLib/macros.h
diff --git a/...DG/3rdParty/ParMetis-3.1/METISLib/match.c → DG/3rdParty/ParMetis-3.1/METISLib/match.c b/...DG/3rdParty/ParMetis-3.1/METISLib/match.c → DG/3rdParty/ParMetis-3.1/METISLib/match.c
diff --git a/...3rdParty/ParMetis-3.1/METISLib/mbalance.c → DG/3rdParty/ParMetis-3.1/METISLib/mbalance.c b/...3rdParty/ParMetis-3.1/METISLib/mbalance.c → DG/3rdParty/ParMetis-3.1/METISLib/mbalance.c
diff --git a/...rdParty/ParMetis-3.1/METISLib/mbalance2.c → ...rdParty/ParMetis-3.1/METISLib/mbalance2.c b/...rdParty/ParMetis-3.1/METISLib/mbalance2.c → ...rdParty/ParMetis-3.1/METISLib/mbalance2.c
diff --git a/...3rdParty/ParMetis-3.1/METISLib/mcoarsen.c → DG/3rdParty/ParMetis-3.1/METISLib/mcoarsen.c b/...3rdParty/ParMetis-3.1/METISLib/mcoarsen.c → DG/3rdParty/ParMetis-3.1/METISLib/mcoarsen.c
diff --git a/...G/3rdParty/ParMetis-3.1/METISLib/memory.c → DG/3rdParty/ParMetis-3.1/METISLib/memory.c b/...G/3rdParty/ParMetis-3.1/METISLib/memory.c → DG/3rdParty/ParMetis-3.1/METISLib/memory.c
diff --git a/.../DG/3rdParty/ParMetis-3.1/METISLib/mesh.c → DG/3rdParty/ParMetis-3.1/METISLib/mesh.c b/.../DG/3rdParty/ParMetis-3.1/METISLib/mesh.c → DG/3rdParty/ParMetis-3.1/METISLib/mesh.c
diff --git a/...3rdParty/ParMetis-3.1/METISLib/meshpart.c → DG/3rdParty/ParMetis-3.1/METISLib/meshpart.c b/...3rdParty/ParMetis-3.1/METISLib/meshpart.c → DG/3rdParty/ParMetis-3.1/METISLib/meshpart.c
diff --git a/...DG/3rdParty/ParMetis-3.1/METISLib/metis.h → DG/3rdParty/ParMetis-3.1/METISLib/metis.h b/...DG/3rdParty/ParMetis-3.1/METISLib/metis.h → DG/3rdParty/ParMetis-3.1/METISLib/metis.h
diff --git a/...A/DG/3rdParty/ParMetis-3.1/METISLib/mfm.c → DG/3rdParty/ParMetis-3.1/METISLib/mfm.c b/...A/DG/3rdParty/ParMetis-3.1/METISLib/mfm.c → DG/3rdParty/ParMetis-3.1/METISLib/mfm.c
diff --git a/.../DG/3rdParty/ParMetis-3.1/METISLib/mfm2.c → DG/3rdParty/ParMetis-3.1/METISLib/mfm2.c b/.../DG/3rdParty/ParMetis-3.1/METISLib/mfm2.c → DG/3rdParty/ParMetis-3.1/METISLib/mfm2.c
diff --git a/...3rdParty/ParMetis-3.1/METISLib/mincover.c → DG/3rdParty/ParMetis-3.1/METISLib/mincover.c b/...3rdParty/ParMetis-3.1/METISLib/mincover.c → DG/3rdParty/ParMetis-3.1/METISLib/mincover.c
diff --git a/...rdParty/ParMetis-3.1/METISLib/minitpart.c → ...rdParty/ParMetis-3.1/METISLib/minitpart.c b/...rdParty/ParMetis-3.1/METISLib/minitpart.c → ...rdParty/ParMetis-3.1/METISLib/minitpart.c
diff --git a/...dParty/ParMetis-3.1/METISLib/minitpart2.c → ...dParty/ParMetis-3.1/METISLib/minitpart2.c b/...dParty/ParMetis-3.1/METISLib/minitpart2.c → ...dParty/ParMetis-3.1/METISLib/minitpart2.c
diff --git a/.../3rdParty/ParMetis-3.1/METISLib/mkmetis.c → DG/3rdParty/ParMetis-3.1/METISLib/mkmetis.c b/.../3rdParty/ParMetis-3.1/METISLib/mkmetis.c → DG/3rdParty/ParMetis-3.1/METISLib/mkmetis.c
diff --git a/...3rdParty/ParMetis-3.1/METISLib/mkwayfmh.c → DG/3rdParty/ParMetis-3.1/METISLib/mkwayfmh.c b/...3rdParty/ParMetis-3.1/METISLib/mkwayfmh.c → DG/3rdParty/ParMetis-3.1/METISLib/mkwayfmh.c
diff --git a/...Party/ParMetis-3.1/METISLib/mkwayrefine.c → ...Party/ParMetis-3.1/METISLib/mkwayrefine.c b/...Party/ParMetis-3.1/METISLib/mkwayrefine.c → ...Party/ParMetis-3.1/METISLib/mkwayrefine.c
diff --git a/...G/3rdParty/ParMetis-3.1/METISLib/mmatch.c → DG/3rdParty/ParMetis-3.1/METISLib/mmatch.c b/...G/3rdParty/ParMetis-3.1/METISLib/mmatch.c → DG/3rdParty/ParMetis-3.1/METISLib/mmatch.c
diff --git a/...A/DG/3rdParty/ParMetis-3.1/METISLib/mmd.c → DG/3rdParty/ParMetis-3.1/METISLib/mmd.c b/...A/DG/3rdParty/ParMetis-3.1/METISLib/mmd.c → DG/3rdParty/ParMetis-3.1/METISLib/mmd.c
diff --git a/.../3rdParty/ParMetis-3.1/METISLib/mpmetis.c → DG/3rdParty/ParMetis-3.1/METISLib/mpmetis.c b/.../3rdParty/ParMetis-3.1/METISLib/mpmetis.c → DG/3rdParty/ParMetis-3.1/METISLib/mpmetis.c
diff --git a/.../3rdParty/ParMetis-3.1/METISLib/mrefine.c → DG/3rdParty/ParMetis-3.1/METISLib/mrefine.c b/.../3rdParty/ParMetis-3.1/METISLib/mrefine.c → DG/3rdParty/ParMetis-3.1/METISLib/mrefine.c
diff --git a/...3rdParty/ParMetis-3.1/METISLib/mrefine2.c → DG/3rdParty/ParMetis-3.1/METISLib/mrefine2.c b/...3rdParty/ParMetis-3.1/METISLib/mrefine2.c → DG/3rdParty/ParMetis-3.1/METISLib/mrefine2.c
diff --git a/...DG/3rdParty/ParMetis-3.1/METISLib/mutil.c → DG/3rdParty/ParMetis-3.1/METISLib/mutil.c b/...DG/3rdParty/ParMetis-3.1/METISLib/mutil.c → DG/3rdParty/ParMetis-3.1/METISLib/mutil.c
diff --git a/.../3rdParty/ParMetis-3.1/METISLib/myqsort.c → DG/3rdParty/ParMetis-3.1/METISLib/myqsort.c b/.../3rdParty/ParMetis-3.1/METISLib/myqsort.c → DG/3rdParty/ParMetis-3.1/METISLib/myqsort.c
diff --git a/...G/3rdParty/ParMetis-3.1/METISLib/ometis.c → DG/3rdParty/ParMetis-3.1/METISLib/ometis.c b/...G/3rdParty/ParMetis-3.1/METISLib/ometis.c → DG/3rdParty/ParMetis-3.1/METISLib/ometis.c
diff --git a/...3rdParty/ParMetis-3.1/METISLib/parmetis.c → DG/3rdParty/ParMetis-3.1/METISLib/parmetis.c b/...3rdParty/ParMetis-3.1/METISLib/parmetis.c → DG/3rdParty/ParMetis-3.1/METISLib/parmetis.c
diff --git a/...G/3rdParty/ParMetis-3.1/METISLib/pmetis.c → DG/3rdParty/ParMetis-3.1/METISLib/pmetis.c b/...G/3rdParty/ParMetis-3.1/METISLib/pmetis.c → DG/3rdParty/ParMetis-3.1/METISLib/pmetis.c
diff --git a/...G/3rdParty/ParMetis-3.1/METISLib/pqueue.c → DG/3rdParty/ParMetis-3.1/METISLib/pqueue.c b/...G/3rdParty/ParMetis-3.1/METISLib/pqueue.c → DG/3rdParty/ParMetis-3.1/METISLib/pqueue.c
diff --git a/...DG/3rdParty/ParMetis-3.1/METISLib/proto.h → DG/3rdParty/ParMetis-3.1/METISLib/proto.h b/...DG/3rdParty/ParMetis-3.1/METISLib/proto.h → DG/3rdParty/ParMetis-3.1/METISLib/proto.h
diff --git a/...G/3rdParty/ParMetis-3.1/METISLib/refine.c → DG/3rdParty/ParMetis-3.1/METISLib/refine.c b/...G/3rdParty/ParMetis-3.1/METISLib/refine.c → DG/3rdParty/ParMetis-3.1/METISLib/refine.c
diff --git a/...G/3rdParty/ParMetis-3.1/METISLib/rename.h → DG/3rdParty/ParMetis-3.1/METISLib/rename.h b/...G/3rdParty/ParMetis-3.1/METISLib/rename.h → DG/3rdParty/ParMetis-3.1/METISLib/rename.h
diff --git a/...rdParty/ParMetis-3.1/METISLib/separator.c → ...rdParty/ParMetis-3.1/METISLib/separator.c b/...rdParty/ParMetis-3.1/METISLib/separator.c → ...rdParty/ParMetis-3.1/METISLib/separator.c
diff --git a/...A/DG/3rdParty/ParMetis-3.1/METISLib/sfm.c → DG/3rdParty/ParMetis-3.1/METISLib/sfm.c b/...A/DG/3rdParty/ParMetis-3.1/METISLib/sfm.c → DG/3rdParty/ParMetis-3.1/METISLib/sfm.c
diff --git a/.../3rdParty/ParMetis-3.1/METISLib/srefine.c → DG/3rdParty/ParMetis-3.1/METISLib/srefine.c b/.../3rdParty/ParMetis-3.1/METISLib/srefine.c → DG/3rdParty/ParMetis-3.1/METISLib/srefine.c
diff --git a/.../DG/3rdParty/ParMetis-3.1/METISLib/stat.c → DG/3rdParty/ParMetis-3.1/METISLib/stat.c b/.../DG/3rdParty/ParMetis-3.1/METISLib/stat.c → DG/3rdParty/ParMetis-3.1/METISLib/stat.c
diff --git a/...DG/3rdParty/ParMetis-3.1/METISLib/stats.c → DG/3rdParty/ParMetis-3.1/METISLib/stats.c b/...DG/3rdParty/ParMetis-3.1/METISLib/stats.c → DG/3rdParty/ParMetis-3.1/METISLib/stats.c
diff --git a/...dParty/ParMetis-3.1/METISLib/stdheaders.h → ...dParty/ParMetis-3.1/METISLib/stdheaders.h b/...dParty/ParMetis-3.1/METISLib/stdheaders.h → ...dParty/ParMetis-3.1/METISLib/stdheaders.h
diff --git a/...G/3rdParty/ParMetis-3.1/METISLib/struct.h → DG/3rdParty/ParMetis-3.1/METISLib/struct.h b/...G/3rdParty/ParMetis-3.1/METISLib/struct.h → DG/3rdParty/ParMetis-3.1/METISLib/struct.h
diff --git a/...dParty/ParMetis-3.1/METISLib/subdomains.c → ...dParty/ParMetis-3.1/METISLib/subdomains.c b/...dParty/ParMetis-3.1/METISLib/subdomains.c → ...dParty/ParMetis-3.1/METISLib/subdomains.c
diff --git a/...G/3rdParty/ParMetis-3.1/METISLib/timing.c → DG/3rdParty/ParMetis-3.1/METISLib/timing.c b/...G/3rdParty/ParMetis-3.1/METISLib/timing.c → DG/3rdParty/ParMetis-3.1/METISLib/timing.c
diff --git a/.../DG/3rdParty/ParMetis-3.1/METISLib/util.c → DG/3rdParty/ParMetis-3.1/METISLib/util.c b/.../DG/3rdParty/ParMetis-3.1/METISLib/util.c → DG/3rdParty/ParMetis-3.1/METISLib/util.c
diff --git a/...ks/CUDA/DG/3rdParty/ParMetis-3.1/Makefile → DG/3rdParty/ParMetis-3.1/Makefile b/...ks/CUDA/DG/3rdParty/ParMetis-3.1/Makefile → DG/3rdParty/ParMetis-3.1/Makefile
diff --git a/...CUDA/DG/3rdParty/ParMetis-3.1/Makefile.in → DG/3rdParty/ParMetis-3.1/Makefile.in b/...CUDA/DG/3rdParty/ParMetis-3.1/Makefile.in → DG/3rdParty/ParMetis-3.1/Makefile.in
diff --git a/...UDA/DG/3rdParty/ParMetis-3.1/Makefile.osx → DG/3rdParty/ParMetis-3.1/Makefile.osx b/...UDA/DG/3rdParty/ParMetis-3.1/Makefile.osx → DG/3rdParty/ParMetis-3.1/Makefile.osx
diff --git a/...UDA/DG/3rdParty/ParMetis-3.1/Makefile.rtc → DG/3rdParty/ParMetis-3.1/Makefile.rtc b/...UDA/DG/3rdParty/ParMetis-3.1/Makefile.rtc → DG/3rdParty/ParMetis-3.1/Makefile.rtc
diff --git a/...G/3rdParty/ParMetis-3.1/Manual/manual.pdf → DG/3rdParty/ParMetis-3.1/Manual/manual.pdf b/...G/3rdParty/ParMetis-3.1/Manual/manual.pdf → DG/3rdParty/ParMetis-3.1/Manual/manual.pdf
diff --git a/...DG/3rdParty/ParMetis-3.1/Manual/manual.ps → DG/3rdParty/ParMetis-3.1/Manual/manual.ps b/...DG/3rdParty/ParMetis-3.1/Manual/manual.ps → DG/3rdParty/ParMetis-3.1/Manual/manual.ps
diff --git a/...rdParty/ParMetis-3.1/ParMETISLib/Makefile → ...rdParty/ParMetis-3.1/ParMETISLib/Makefile b/...rdParty/ParMetis-3.1/ParMETISLib/Makefile → ...rdParty/ParMetis-3.1/ParMETISLib/Makefile
diff --git a/...Party/ParMetis-3.1/ParMETISLib/adrivers.c → ...Party/ParMetis-3.1/ParMETISLib/adrivers.c b/...Party/ParMetis-3.1/ParMETISLib/adrivers.c → ...Party/ParMetis-3.1/ParMETISLib/adrivers.c
diff --git a/...dParty/ParMetis-3.1/ParMETISLib/akwayfm.c → ...dParty/ParMetis-3.1/ParMETISLib/akwayfm.c b/...dParty/ParMetis-3.1/ParMETISLib/akwayfm.c → ...dParty/ParMetis-3.1/ParMETISLib/akwayfm.c
diff --git a/...rdParty/ParMetis-3.1/ParMETISLib/ametis.c → ...rdParty/ParMetis-3.1/ParMETISLib/ametis.c b/...rdParty/ParMetis-3.1/ParMETISLib/ametis.c → ...rdParty/ParMetis-3.1/ParMETISLib/ametis.c
diff --git a/...rty/ParMetis-3.1/ParMETISLib/backcompat.c → ...rty/ParMetis-3.1/ParMETISLib/backcompat.c b/...rty/ParMetis-3.1/ParMETISLib/backcompat.c → ...rty/ParMetis-3.1/ParMETISLib/backcompat.c
diff --git a/.../ParMetis-3.1/ParMETISLib/balancemylink.c → .../ParMetis-3.1/ParMETISLib/balancemylink.c b/.../ParMetis-3.1/ParMETISLib/balancemylink.c → .../ParMetis-3.1/ParMETISLib/balancemylink.c
diff --git a/...dParty/ParMetis-3.1/ParMETISLib/coarsen.c → ...dParty/ParMetis-3.1/ParMETISLib/coarsen.c b/...dParty/ParMetis-3.1/ParMETISLib/coarsen.c → ...dParty/ParMetis-3.1/ParMETISLib/coarsen.c
diff --git a/.../3rdParty/ParMetis-3.1/ParMETISLib/comm.c → DG/3rdParty/ParMetis-3.1/ParMETISLib/comm.c b/.../3rdParty/ParMetis-3.1/ParMETISLib/comm.c → DG/3rdParty/ParMetis-3.1/ParMETISLib/comm.c
diff --git a/...Party/ParMetis-3.1/ParMETISLib/csrmatch.c → ...Party/ParMetis-3.1/ParMETISLib/csrmatch.c b/...Party/ParMetis-3.1/ParMETISLib/csrmatch.c → ...Party/ParMetis-3.1/ParMETISLib/csrmatch.c
diff --git a/...3rdParty/ParMetis-3.1/ParMETISLib/debug.c → DG/3rdParty/ParMetis-3.1/ParMETISLib/debug.c b/...3rdParty/ParMetis-3.1/ParMETISLib/debug.c → DG/3rdParty/ParMetis-3.1/ParMETISLib/debug.c
diff --git a/.../3rdParty/ParMetis-3.1/ParMETISLib/defs.h → DG/3rdParty/ParMetis-3.1/ParMETISLib/defs.h b/.../3rdParty/ParMetis-3.1/ParMETISLib/defs.h → DG/3rdParty/ParMetis-3.1/ParMETISLib/defs.h
diff --git a/...Party/ParMetis-3.1/ParMETISLib/diffutil.c → ...Party/ParMetis-3.1/ParMETISLib/diffutil.c b/...Party/ParMetis-3.1/ParMETISLib/diffutil.c → ...Party/ParMetis-3.1/ParMETISLib/diffutil.c
diff --git a/...dParty/ParMetis-3.1/ParMETISLib/fpqueue.c → ...dParty/ParMetis-3.1/ParMETISLib/fpqueue.c b/...dParty/ParMetis-3.1/ParMETISLib/fpqueue.c → ...dParty/ParMetis-3.1/ParMETISLib/fpqueue.c
diff --git a/...dParty/ParMetis-3.1/ParMETISLib/frename.c → ...dParty/ParMetis-3.1/ParMETISLib/frename.c b/...dParty/ParMetis-3.1/ParMETISLib/frename.c → ...dParty/ParMetis-3.1/ParMETISLib/frename.c
diff --git a/...dParty/ParMetis-3.1/ParMETISLib/gkmetis.c → ...dParty/ParMetis-3.1/ParMETISLib/gkmetis.c b/...dParty/ParMetis-3.1/ParMETISLib/gkmetis.c → ...dParty/ParMetis-3.1/ParMETISLib/gkmetis.c
diff --git a/...dParty/ParMetis-3.1/ParMETISLib/grsetup.c → ...dParty/ParMetis-3.1/ParMETISLib/grsetup.c b/...dParty/ParMetis-3.1/ParMETISLib/grsetup.c → ...dParty/ParMetis-3.1/ParMETISLib/grsetup.c
diff --git a/...Party/ParMetis-3.1/ParMETISLib/iidxsort.c → ...Party/ParMetis-3.1/ParMETISLib/iidxsort.c b/...Party/ParMetis-3.1/ParMETISLib/iidxsort.c → ...Party/ParMetis-3.1/ParMETISLib/iidxsort.c
diff --git a/...Party/ParMetis-3.1/ParMETISLib/iintsort.c → ...Party/ParMetis-3.1/ParMETISLib/iintsort.c b/...Party/ParMetis-3.1/ParMETISLib/iintsort.c → ...Party/ParMetis-3.1/ParMETISLib/iintsort.c
diff --git a/...Party/ParMetis-3.1/ParMETISLib/ikeysort.c → ...Party/ParMetis-3.1/ParMETISLib/ikeysort.c b/...Party/ParMetis-3.1/ParMETISLib/ikeysort.c → ...Party/ParMetis-3.1/ParMETISLib/ikeysort.c
diff --git a/...ty/ParMetis-3.1/ParMETISLib/ikeyvalsort.c → ...ty/ParMetis-3.1/ParMETISLib/ikeyvalsort.c b/...ty/ParMetis-3.1/ParMETISLib/ikeyvalsort.c → ...ty/ParMetis-3.1/ParMETISLib/ikeyvalsort.c
diff --git a/...ty/ParMetis-3.1/ParMETISLib/initbalance.c → ...ty/ParMetis-3.1/ParMETISLib/initbalance.c b/...ty/ParMetis-3.1/ParMETISLib/initbalance.c → ...ty/ParMetis-3.1/ParMETISLib/initbalance.c
diff --git a/...y/ParMetis-3.1/ParMETISLib/initmsection.c → ...y/ParMetis-3.1/ParMETISLib/initmsection.c b/...y/ParMetis-3.1/ParMETISLib/initmsection.c → ...y/ParMetis-3.1/ParMETISLib/initmsection.c
diff --git a/...Party/ParMetis-3.1/ParMETISLib/initpart.c → ...Party/ParMetis-3.1/ParMETISLib/initpart.c b/...Party/ParMetis-3.1/ParMETISLib/initpart.c → ...Party/ParMetis-3.1/ParMETISLib/initpart.c
diff --git a/...rdParty/ParMetis-3.1/ParMETISLib/kmetis.c → ...rdParty/ParMetis-3.1/ParMETISLib/kmetis.c b/...rdParty/ParMetis-3.1/ParMETISLib/kmetis.c → ...rdParty/ParMetis-3.1/ParMETISLib/kmetis.c
diff --git a/...ty/ParMetis-3.1/ParMETISLib/kwaybalance.c → ...ty/ParMetis-3.1/ParMETISLib/kwaybalance.c b/...ty/ParMetis-3.1/ParMETISLib/kwaybalance.c → ...ty/ParMetis-3.1/ParMETISLib/kwaybalance.c
diff --git a/...rdParty/ParMetis-3.1/ParMETISLib/kwayfm.c → ...rdParty/ParMetis-3.1/ParMETISLib/kwayfm.c b/...rdParty/ParMetis-3.1/ParMETISLib/kwayfm.c → ...rdParty/ParMetis-3.1/ParMETISLib/kwayfm.c
diff --git a/...rty/ParMetis-3.1/ParMETISLib/kwayrefine.c → ...rty/ParMetis-3.1/ParMETISLib/kwayrefine.c b/...rty/ParMetis-3.1/ParMETISLib/kwayrefine.c → ...rty/ParMetis-3.1/ParMETISLib/kwayrefine.c
diff --git a/...rdParty/ParMetis-3.1/ParMETISLib/lmatch.c → ...rdParty/ParMetis-3.1/ParMETISLib/lmatch.c b/...rdParty/ParMetis-3.1/ParMETISLib/lmatch.c → ...rdParty/ParMetis-3.1/ParMETISLib/lmatch.c
diff --git a/...rdParty/ParMetis-3.1/ParMETISLib/macros.h → ...rdParty/ParMetis-3.1/ParMETISLib/macros.h b/...rdParty/ParMetis-3.1/ParMETISLib/macros.h → ...rdParty/ParMetis-3.1/ParMETISLib/macros.h
diff --git a/...3rdParty/ParMetis-3.1/ParMETISLib/match.c → DG/3rdParty/ParMetis-3.1/ParMETISLib/match.c b/...3rdParty/ParMetis-3.1/ParMETISLib/match.c → DG/3rdParty/ParMetis-3.1/ParMETISLib/match.c
diff --git a/...rty/ParMetis-3.1/ParMETISLib/mdiffusion.c → ...rty/ParMetis-3.1/ParMETISLib/mdiffusion.c b/...rty/ParMetis-3.1/ParMETISLib/mdiffusion.c → ...rty/ParMetis-3.1/ParMETISLib/mdiffusion.c
diff --git a/...Party/ParMetis-3.1/ParMETISLib/mdrivers.c → ...Party/ParMetis-3.1/ParMETISLib/mdrivers.c b/...Party/ParMetis-3.1/ParMETISLib/mdrivers.c → ...Party/ParMetis-3.1/ParMETISLib/mdrivers.c
diff --git a/...rdParty/ParMetis-3.1/ParMETISLib/memory.c → ...rdParty/ParMetis-3.1/ParMETISLib/memory.c b/...rdParty/ParMetis-3.1/ParMETISLib/memory.c → ...rdParty/ParMetis-3.1/ParMETISLib/memory.c
diff --git a/.../3rdParty/ParMetis-3.1/ParMETISLib/mesh.c → DG/3rdParty/ParMetis-3.1/ParMETISLib/mesh.c b/.../3rdParty/ParMetis-3.1/ParMETISLib/mesh.c → DG/3rdParty/ParMetis-3.1/ParMETISLib/mesh.c
diff --git a/...rdParty/ParMetis-3.1/ParMETISLib/mmetis.c → ...rdParty/ParMetis-3.1/ParMETISLib/mmetis.c b/...rdParty/ParMetis-3.1/ParMETISLib/mmetis.c → ...rdParty/ParMetis-3.1/ParMETISLib/mmetis.c
diff --git a/.../3rdParty/ParMetis-3.1/ParMETISLib/move.c → DG/3rdParty/ParMetis-3.1/ParMETISLib/move.c b/.../3rdParty/ParMetis-3.1/ParMETISLib/move.c → DG/3rdParty/ParMetis-3.1/ParMETISLib/move.c
diff --git a/...rdParty/ParMetis-3.1/ParMETISLib/msetup.c → ...rdParty/ParMetis-3.1/ParMETISLib/msetup.c b/...rdParty/ParMetis-3.1/ParMETISLib/msetup.c → ...rdParty/ParMetis-3.1/ParMETISLib/msetup.c
diff --git a/...ty/ParMetis-3.1/ParMETISLib/node_refine.c → ...ty/ParMetis-3.1/ParMETISLib/node_refine.c b/...ty/ParMetis-3.1/ParMETISLib/node_refine.c → ...ty/ParMetis-3.1/ParMETISLib/node_refine.c
diff --git a/...rdParty/ParMetis-3.1/ParMETISLib/ometis.c → ...rdParty/ParMetis-3.1/ParMETISLib/ometis.c b/...rdParty/ParMetis-3.1/ParMETISLib/ometis.c → ...rdParty/ParMetis-3.1/ParMETISLib/ometis.c
diff --git a/...3rdParty/ParMetis-3.1/ParMETISLib/order.c → DG/3rdParty/ParMetis-3.1/ParMETISLib/order.c b/...3rdParty/ParMetis-3.1/ParMETISLib/order.c → DG/3rdParty/ParMetis-3.1/ParMETISLib/order.c
diff --git a/...ty/ParMetis-3.1/ParMETISLib/parmetislib.h → ...ty/ParMetis-3.1/ParMETISLib/parmetislib.h b/...ty/ParMetis-3.1/ParMETISLib/parmetislib.h → ...ty/ParMetis-3.1/ParMETISLib/parmetislib.h
diff --git a/...3rdParty/ParMetis-3.1/ParMETISLib/proto.h → DG/3rdParty/ParMetis-3.1/ParMETISLib/proto.h b/...3rdParty/ParMetis-3.1/ParMETISLib/proto.h → DG/3rdParty/ParMetis-3.1/ParMETISLib/proto.h
diff --git a/...dParty/ParMetis-3.1/ParMETISLib/pspases.c → ...dParty/ParMetis-3.1/ParMETISLib/pspases.c b/...dParty/ParMetis-3.1/ParMETISLib/pspases.c → ...dParty/ParMetis-3.1/ParMETISLib/pspases.c
diff --git a/...rty/ParMetis-3.1/ParMETISLib/redomylink.c → ...rty/ParMetis-3.1/ParMETISLib/redomylink.c b/...rty/ParMetis-3.1/ParMETISLib/redomylink.c → ...rty/ParMetis-3.1/ParMETISLib/redomylink.c
diff --git a/...3rdParty/ParMetis-3.1/ParMETISLib/remap.c → DG/3rdParty/ParMetis-3.1/ParMETISLib/remap.c b/...3rdParty/ParMetis-3.1/ParMETISLib/remap.c → DG/3rdParty/ParMetis-3.1/ParMETISLib/remap.c
diff --git a/...rdParty/ParMetis-3.1/ParMETISLib/rename.h → ...rdParty/ParMetis-3.1/ParMETISLib/rename.h b/...rdParty/ParMetis-3.1/ParMETISLib/rename.h → ...rdParty/ParMetis-3.1/ParMETISLib/rename.h
diff --git a/...rdParty/ParMetis-3.1/ParMETISLib/rmetis.c → ...rdParty/ParMetis-3.1/ParMETISLib/rmetis.c b/...rdParty/ParMetis-3.1/ParMETISLib/rmetis.c → ...rdParty/ParMetis-3.1/ParMETISLib/rmetis.c
diff --git a/...dParty/ParMetis-3.1/ParMETISLib/selectq.c → ...dParty/ParMetis-3.1/ParMETISLib/selectq.c b/...dParty/ParMetis-3.1/ParMETISLib/selectq.c → ...dParty/ParMetis-3.1/ParMETISLib/selectq.c
diff --git a/...rdParty/ParMetis-3.1/ParMETISLib/serial.c → ...rdParty/ParMetis-3.1/ParMETISLib/serial.c b/...rdParty/ParMetis-3.1/ParMETISLib/serial.c → ...rdParty/ParMetis-3.1/ParMETISLib/serial.c
diff --git a/...3rdParty/ParMetis-3.1/ParMETISLib/setup.c → DG/3rdParty/ParMetis-3.1/ParMETISLib/setup.c b/...3rdParty/ParMetis-3.1/ParMETISLib/setup.c → DG/3rdParty/ParMetis-3.1/ParMETISLib/setup.c
diff --git a/.../3rdParty/ParMetis-3.1/ParMETISLib/stat.c → DG/3rdParty/ParMetis-3.1/ParMETISLib/stat.c b/.../3rdParty/ParMetis-3.1/ParMETISLib/stat.c → DG/3rdParty/ParMetis-3.1/ParMETISLib/stat.c
diff --git a/...rty/ParMetis-3.1/ParMETISLib/stdheaders.h → ...rty/ParMetis-3.1/ParMETISLib/stdheaders.h b/...rty/ParMetis-3.1/ParMETISLib/stdheaders.h → ...rty/ParMetis-3.1/ParMETISLib/stdheaders.h
diff --git a/...rdParty/ParMetis-3.1/ParMETISLib/struct.h → ...rdParty/ParMetis-3.1/ParMETISLib/struct.h b/...rdParty/ParMetis-3.1/ParMETISLib/struct.h → ...rdParty/ParMetis-3.1/ParMETISLib/struct.h
diff --git a/...DG/3rdParty/ParMetis-3.1/ParMETISLib/sync → DG/3rdParty/ParMetis-3.1/ParMETISLib/sync b/...DG/3rdParty/ParMetis-3.1/ParMETISLib/sync → DG/3rdParty/ParMetis-3.1/ParMETISLib/sync
diff --git a/...3rdParty/ParMetis-3.1/ParMETISLib/timer.c → DG/3rdParty/ParMetis-3.1/ParMETISLib/timer.c b/...3rdParty/ParMetis-3.1/ParMETISLib/timer.c → DG/3rdParty/ParMetis-3.1/ParMETISLib/timer.c
diff --git a/.../3rdParty/ParMetis-3.1/ParMETISLib/util.c → DG/3rdParty/ParMetis-3.1/ParMETISLib/util.c b/.../3rdParty/ParMetis-3.1/ParMETISLib/util.c → DG/3rdParty/ParMetis-3.1/ParMETISLib/util.c
diff --git a/.../3rdParty/ParMetis-3.1/ParMETISLib/wave.c → DG/3rdParty/ParMetis-3.1/ParMETISLib/wave.c b/.../3rdParty/ParMetis-3.1/ParMETISLib/wave.c → DG/3rdParty/ParMetis-3.1/ParMETISLib/wave.c
diff --git a/...3rdParty/ParMetis-3.1/ParMETISLib/weird.c → DG/3rdParty/ParMetis-3.1/ParMETISLib/weird.c b/...3rdParty/ParMetis-3.1/ParMETISLib/weird.c → DG/3rdParty/ParMetis-3.1/ParMETISLib/weird.c
diff --git a/...dParty/ParMetis-3.1/ParMETISLib/xyzpart.c → ...dParty/ParMetis-3.1/ParMETISLib/xyzpart.c b/...dParty/ParMetis-3.1/ParMETISLib/xyzpart.c → ...dParty/ParMetis-3.1/ParMETISLib/xyzpart.c
diff --git a/...G/3rdParty/ParMetis-3.1/Programs/Makefile → DG/3rdParty/ParMetis-3.1/Programs/Makefile b/...G/3rdParty/ParMetis-3.1/Programs/Makefile → DG/3rdParty/ParMetis-3.1/Programs/Makefile
diff --git a/...dParty/ParMetis-3.1/Programs/adaptgraph.c → ...dParty/ParMetis-3.1/Programs/adaptgraph.c b/...dParty/ParMetis-3.1/Programs/adaptgraph.c → ...dParty/ParMetis-3.1/Programs/adaptgraph.c
diff --git a/...DA/DG/3rdParty/ParMetis-3.1/Programs/io.c → DG/3rdParty/ParMetis-3.1/Programs/io.c b/...DA/DG/3rdParty/ParMetis-3.1/Programs/io.c → DG/3rdParty/ParMetis-3.1/Programs/io.c
diff --git a/...DG/3rdParty/ParMetis-3.1/Programs/mtest.c → DG/3rdParty/ParMetis-3.1/Programs/mtest.c b/...DG/3rdParty/ParMetis-3.1/Programs/mtest.c → DG/3rdParty/ParMetis-3.1/Programs/mtest.c
diff --git a/...Party/ParMetis-3.1/Programs/parmetisbin.h → ...Party/ParMetis-3.1/Programs/parmetisbin.h b/...Party/ParMetis-3.1/Programs/parmetisbin.h → ...Party/ParMetis-3.1/Programs/parmetisbin.h
diff --git a/...DG/3rdParty/ParMetis-3.1/Programs/ptest.c → DG/3rdParty/ParMetis-3.1/Programs/ptest.c b/...DG/3rdParty/ParMetis-3.1/Programs/ptest.c → DG/3rdParty/ParMetis-3.1/Programs/ptest.c
diff --git a/...arks/CUDA/DG/3rdParty/ParMetis-3.1/README → DG/3rdParty/ParMetis-3.1/README b/...arks/CUDA/DG/3rdParty/ParMetis-3.1/README → DG/3rdParty/ParMetis-3.1/README
diff --git a/...rks/CUDA/DG/3rdParty/ParMetis-3.1/VERSION → DG/3rdParty/ParMetis-3.1/VERSION b/...rks/CUDA/DG/3rdParty/ParMetis-3.1/VERSION → DG/3rdParty/ParMetis-3.1/VERSION
diff --git a/.../CUDA/DG/3rdParty/ParMetis-3.1/parmetis.h → DG/3rdParty/ParMetis-3.1/parmetis.h b/.../CUDA/DG/3rdParty/ParMetis-3.1/parmetis.h → DG/3rdParty/ParMetis-3.1/parmetis.h
diff --git a/benchmarks/CUDA/DG/Makefile → DG/Makefile b/benchmarks/CUDA/DG/Makefile → DG/Makefile
@@ -40,7 +40,7 @@ CUFILES		:= src/MaxwellsKernel3d.cu
 # C/C++ source files (compiled with gcc / c++)
 CFILES		:= src/Mesh3d.c src/Utils.c src/LoadBalance3d.c src/FacePair3d.c src/ParallelPairs.c src/BuildMaps3d.c src/StartUp3d.c src/MaxwellsRun3d.c \
 		src/MaxwellsMPI3d.c src/MaxwellsDriver3d.c
-GPGPUSIM_ROOT   := ../../..
+GPGPUSIM_ROOT   := ..
 PWD := $(shell pwd)
 SRCDIR  = ./src/
 HDRDIR  = ./include
@@ -62,7 +62,7 @@ NEWCPP = $(OPENMPI_BINDIR)mpicxx
 ###############################################################################
 # Rules and targets
 
-include ../../../common/common.mk
+include ../../common/common.mk
 
 LINKLINE += $(MPILNKOPTS) -L$(PWD)/3rdParty/ParMetis-3.1/ -lparmetis -lmetis -lm 
 
diff --git a/benchmarks/CUDA/DG/MakefileCPU2d → DG/MakefileCPU2d b/benchmarks/CUDA/DG/MakefileCPU2d → DG/MakefileCPU2d
diff --git a/benchmarks/CUDA/DG/MakefileGPU2d → DG/MakefileGPU2d b/benchmarks/CUDA/DG/MakefileGPU2d → DG/MakefileGPU2d
diff --git a/benchmarks/CUDA/DG/Makefiles/Makefile → DG/Makefiles/Makefile b/benchmarks/CUDA/DG/Makefiles/Makefile → DG/Makefiles/Makefile
diff --git a/benchmarks/CUDA/DG/Makefiles/MakefileCPU3d → DG/Makefiles/MakefileCPU3d b/benchmarks/CUDA/DG/Makefiles/MakefileCPU3d → DG/Makefiles/MakefileCPU3d
diff --git a/benchmarks/CUDA/DG/Makefiles/MakefileGPU3d → DG/Makefiles/MakefileGPU3d b/benchmarks/CUDA/DG/Makefiles/MakefileGPU3d → DG/Makefiles/MakefileGPU3d
diff --git a/benchmarks/CUDA/DG/Meshes/F072.neu → DG/Meshes/F072.neu b/benchmarks/CUDA/DG/Meshes/F072.neu → DG/Meshes/F072.neu
diff --git a/benchmarks/CUDA/DG/Meshes/FS_K01022.neu → DG/Meshes/FS_K01022.neu b/benchmarks/CUDA/DG/Meshes/FS_K01022.neu → DG/Meshes/FS_K01022.neu
diff --git a/benchmarks/CUDA/DG/Meshes/block2.neu → DG/Meshes/block2.neu b/benchmarks/CUDA/DG/Meshes/block2.neu → DG/Meshes/block2.neu
diff --git a/benchmarks/CUDA/DG/Meshes/block3.neu → DG/Meshes/block3.neu b/benchmarks/CUDA/DG/Meshes/block3.neu → DG/Meshes/block3.neu
diff --git a/benchmarks/CUDA/DG/Meshes/cubeK268.neu → DG/Meshes/cubeK268.neu b/benchmarks/CUDA/DG/Meshes/cubeK268.neu → DG/Meshes/cubeK268.neu
diff --git a/DG/README.GPGPU-Sim b/DG/README.GPGPU-Sim
@@ -0,0 +1 @@
+../bin/release/DG ./data/cubeK268.neu
diff --git a/benchmarks/CUDA/DG/buildsource.m → DG/buildsource.m b/benchmarks/CUDA/DG/buildsource.m → DG/buildsource.m
diff --git a/benchmarks/CUDA/DG/data/F072.neu → DG/data/F072.neu b/benchmarks/CUDA/DG/data/F072.neu → DG/data/F072.neu
diff --git a/benchmarks/CUDA/DG/data/FS_K01022.neu → DG/data/FS_K01022.neu b/benchmarks/CUDA/DG/data/FS_K01022.neu → DG/data/FS_K01022.neu
diff --git a/benchmarks/CUDA/DG/data/block2.neu → DG/data/block2.neu b/benchmarks/CUDA/DG/data/block2.neu → DG/data/block2.neu
diff --git a/benchmarks/CUDA/DG/data/block3.neu → DG/data/block3.neu b/benchmarks/CUDA/DG/data/block3.neu → DG/data/block3.neu
diff --git a/benchmarks/CUDA/DG/data/cubeK268.neu → DG/data/cubeK268.neu b/benchmarks/CUDA/DG/data/cubeK268.neu → DG/data/cubeK268.neu
diff --git a/benchmarks/CUDA/DG/include/Mesh.h → DG/include/Mesh.h b/benchmarks/CUDA/DG/include/Mesh.h → DG/include/Mesh.h
diff --git a/benchmarks/CUDA/DG/include/data3dN06.h → DG/include/data3dN06.h b/benchmarks/CUDA/DG/include/data3dN06.h → DG/include/data3dN06.h
diff --git a/benchmarks/CUDA/DG/include/defs.h → DG/include/defs.h b/benchmarks/CUDA/DG/include/defs.h → DG/include/defs.h
diff --git a/benchmarks/CUDA/DG/include/fem.h → DG/include/fem.h b/benchmarks/CUDA/DG/include/fem.h → DG/include/fem.h
diff --git a/benchmarks/CUDA/DG/include/macros.h → DG/include/macros.h b/benchmarks/CUDA/DG/include/macros.h → DG/include/macros.h
diff --git a/benchmarks/CUDA/DG/include/parmetis.h → DG/include/parmetis.h b/benchmarks/CUDA/DG/include/parmetis.h → DG/include/parmetis.h
diff --git a/benchmarks/CUDA/DG/include/parmetisbin.h → DG/include/parmetisbin.h b/benchmarks/CUDA/DG/include/parmetisbin.h → DG/include/parmetisbin.h
diff --git a/benchmarks/CUDA/DG/include/proto.h → DG/include/proto.h b/benchmarks/CUDA/DG/include/proto.h → DG/include/proto.h
diff --git a/benchmarks/CUDA/DG/include/rename.h → DG/include/rename.h b/benchmarks/CUDA/DG/include/rename.h → DG/include/rename.h
diff --git a/benchmarks/CUDA/DG/include/stdheaders.h → DG/include/stdheaders.h b/benchmarks/CUDA/DG/include/stdheaders.h → DG/include/stdheaders.h
diff --git a/benchmarks/CUDA/DG/include/struct.h → DG/include/struct.h b/benchmarks/CUDA/DG/include/struct.h → DG/include/struct.h
diff --git a/benchmarks/CUDA/DG/license.midg → DG/license.midg b/benchmarks/CUDA/DG/license.midg → DG/license.midg
diff --git a/benchmarks/CUDA/DG/readme → DG/readme b/benchmarks/CUDA/DG/readme → DG/readme
diff --git a/benchmarks/CUDA/DG/src/BuildMaps2d.c → DG/src/BuildMaps2d.c b/benchmarks/CUDA/DG/src/BuildMaps2d.c → DG/src/BuildMaps2d.c
diff --git a/benchmarks/CUDA/DG/src/BuildMaps3d.c → DG/src/BuildMaps3d.c b/benchmarks/CUDA/DG/src/BuildMaps3d.c → DG/src/BuildMaps3d.c
diff --git a/benchmarks/CUDA/DG/src/FacePair2d.c → DG/src/FacePair2d.c b/benchmarks/CUDA/DG/src/FacePair2d.c → DG/src/FacePair2d.c
diff --git a/benchmarks/CUDA/DG/src/FacePair3d.c → DG/src/FacePair3d.c b/benchmarks/CUDA/DG/src/FacePair3d.c → DG/src/FacePair3d.c
diff --git a/benchmarks/CUDA/DG/src/InitCPU3d.c → DG/src/InitCPU3d.c b/benchmarks/CUDA/DG/src/InitCPU3d.c → DG/src/InitCPU3d.c
diff --git a/benchmarks/CUDA/DG/src/LoadBalance3d.c → DG/src/LoadBalance3d.c b/benchmarks/CUDA/DG/src/LoadBalance3d.c → DG/src/LoadBalance3d.c
diff --git a/benchmarks/CUDA/DG/src/MaxwellsDriver3d.c → DG/src/MaxwellsDriver3d.c b/benchmarks/CUDA/DG/src/MaxwellsDriver3d.c → DG/src/MaxwellsDriver3d.c
diff --git a/benchmarks/CUDA/DG/src/MaxwellsKernel3d.cu → DG/src/MaxwellsKernel3d.cu b/benchmarks/CUDA/DG/src/MaxwellsKernel3d.cu → DG/src/MaxwellsKernel3d.cu
diff --git a/benchmarks/CUDA/DG/src/MaxwellsMPI3d.c → DG/src/MaxwellsMPI3d.c b/benchmarks/CUDA/DG/src/MaxwellsMPI3d.c → DG/src/MaxwellsMPI3d.c
diff --git a/benchmarks/CUDA/DG/src/MaxwellsRHS3d.c → DG/src/MaxwellsRHS3d.c b/benchmarks/CUDA/DG/src/MaxwellsRHS3d.c → DG/src/MaxwellsRHS3d.c
diff --git a/benchmarks/CUDA/DG/src/MaxwellsRun3d.c → DG/src/MaxwellsRun3d.c b/benchmarks/CUDA/DG/src/MaxwellsRun3d.c → DG/src/MaxwellsRun3d.c
diff --git a/benchmarks/CUDA/DG/src/Mesh3d.c → DG/src/Mesh3d.c b/benchmarks/CUDA/DG/src/Mesh3d.c → DG/src/Mesh3d.c
diff --git a/benchmarks/CUDA/DG/src/ParallelPairs.c → DG/src/ParallelPairs.c b/benchmarks/CUDA/DG/src/ParallelPairs.c → DG/src/ParallelPairs.c
diff --git a/benchmarks/CUDA/DG/src/StartUp3d.c → DG/src/StartUp3d.c b/benchmarks/CUDA/DG/src/StartUp3d.c → DG/src/StartUp3d.c
diff --git a/benchmarks/CUDA/DG/src/Utils.c → DG/src/Utils.c b/benchmarks/CUDA/DG/src/Utils.c → DG/src/Utils.c
diff --git a/benchmarks/CUDA/DG/src/buildsource.m → DG/src/buildsource.m b/benchmarks/CUDA/DG/src/buildsource.m → DG/src/buildsource.m
diff --git a/benchmarks/CUDA/DG/src/gpuDG.vpj → DG/src/gpuDG.vpj b/benchmarks/CUDA/DG/src/gpuDG.vpj → DG/src/gpuDG.vpj
diff --git a/benchmarks/CUDA/DG/src/tictoc.cu → DG/src/tictoc.cu b/benchmarks/CUDA/DG/src/tictoc.cu → DG/src/tictoc.cu
diff --git a/benchmarks/CUDA/LIB/Makefile → LIB/Makefile b/benchmarks/CUDA/LIB/Makefile → LIB/Makefile
@@ -40,9 +40,9 @@ CUFILES		:= libor.cu
 # C/C++ source files (compiled with gcc / c++)
 CCFILES		:= 
 
-GPGPUSIM_ROOT  := ../../..
+GPGPUSIM_ROOT  := ..
 
 ################################################################################
 # Rules and targets
-include ../../../common/common.mk
+include ../../common/common.mk
 
diff --git a/LIB/README.GPGPU-Sim b/LIB/README.GPGPU-Sim
@@ -0,0 +1 @@
+../bin/release/LIB
diff --git a/benchmarks/CUDA/LIB/libor.cu → LIB/libor.cu b/benchmarks/CUDA/LIB/libor.cu → LIB/libor.cu
diff --git a/benchmarks/CUDA/LPS/Makefile → LPS/Makefile b/benchmarks/CUDA/LPS/Makefile → LPS/Makefile
@@ -16,10 +16,10 @@ CU_DEPS		:= \
 CCFILES		:= \
 	laplace3d_gold.cpp \
 
-GPGPUSIM_ROOT  := ../../..
+GPGPUSIM_ROOT  := ..
 
 ################################################################################
 # Rules and targets
 
-include ../../../common/common.mk
+include ../../common/common.mk
 
diff --git a/LPS/README.GPGPU-Sim b/LPS/README.GPGPU-Sim
@@ -0,0 +1 @@
+../bin/release/LPS
diff --git a/benchmarks/CUDA/LPS/laplace3d.cu → LPS/laplace3d.cu b/benchmarks/CUDA/LPS/laplace3d.cu → LPS/laplace3d.cu
diff --git a/benchmarks/CUDA/LPS/laplace3d_gold.cpp → LPS/laplace3d_gold.cpp b/benchmarks/CUDA/LPS/laplace3d_gold.cpp → LPS/laplace3d_gold.cpp
diff --git a/benchmarks/CUDA/LPS/laplace3d_kernel.cu → LPS/laplace3d_kernel.cu b/benchmarks/CUDA/LPS/laplace3d_kernel.cu → LPS/laplace3d_kernel.cu
diff --git a/benchmarks/CUDA/MUM/AUTHORS → MUM/AUTHORS b/benchmarks/CUDA/MUM/AUTHORS → MUM/AUTHORS
diff --git a/benchmarks/CUDA/MUM/COPYING → MUM/COPYING b/benchmarks/CUDA/MUM/COPYING → MUM/COPYING
diff --git a/benchmarks/CUDA/MUM/Makefile → MUM/Makefile b/benchmarks/CUDA/MUM/Makefile → MUM/Makefile
@@ -47,5 +47,5 @@ CCFILES		:= \
 ################################################################################
 # Rules and targets
 
-GPGPUSIM_ROOT := ../../..
-include ../../../common/common.mk
+GPGPUSIM_ROOT := ..
+include ../../common/common.mk
diff --git a/benchmarks/CUDA/MUM/PoolMalloc.cpp → MUM/PoolMalloc.cpp b/benchmarks/CUDA/MUM/PoolMalloc.cpp → MUM/PoolMalloc.cpp
diff --git a/benchmarks/CUDA/MUM/PoolMalloc.hh → MUM/PoolMalloc.hh b/benchmarks/CUDA/MUM/PoolMalloc.hh → MUM/PoolMalloc.hh
diff --git a/benchmarks/CUDA/MUM/README → MUM/README b/benchmarks/CUDA/MUM/README → MUM/README
diff --git a/MUM/README.GPGPU-Sim b/MUM/README.GPGPU-Sim
@@ -0,0 +1 @@
+../bin/release/MUM ./data/NC_003997.20k.fna ./data/NC_003997_q25bp.50k.fna
diff --git a/benchmarks/CUDA/MUM/common.cu → MUM/common.cu b/benchmarks/CUDA/MUM/common.cu → MUM/common.cu
diff --git a/benchmarks/CUDA/MUM/data/NC_003997.20k.fna → MUM/data/NC_003997.20k.fna b/benchmarks/CUDA/MUM/data/NC_003997.20k.fna → MUM/data/NC_003997.20k.fna
diff --git a/...rks/CUDA/MUM/data/NC_003997_q25bp.50k.fna → MUM/data/NC_003997_q25bp.50k.fna b/...rks/CUDA/MUM/data/NC_003997_q25bp.50k.fna → MUM/data/NC_003997_q25bp.50k.fna
diff --git a/benchmarks/CUDA/MUM/genreads.py → MUM/genreads.py b/benchmarks/CUDA/MUM/genreads.py → MUM/genreads.py
diff --git a/benchmarks/CUDA/MUM/info.xml → MUM/info.xml b/benchmarks/CUDA/MUM/info.xml → MUM/info.xml
diff --git a/benchmarks/CUDA/MUM/make_figures.py → MUM/make_figures.py b/benchmarks/CUDA/MUM/make_figures.py → MUM/make_figures.py
diff --git a/benchmarks/CUDA/MUM/morton.c → MUM/morton.c b/benchmarks/CUDA/MUM/morton.c → MUM/morton.c
diff --git a/benchmarks/CUDA/MUM/mummergpu.cu → MUM/mummergpu.cu b/benchmarks/CUDA/MUM/mummergpu.cu → MUM/mummergpu.cu
diff --git a/benchmarks/CUDA/MUM/mummergpu.h → MUM/mummergpu.h b/benchmarks/CUDA/MUM/mummergpu.h → MUM/mummergpu.h
diff --git a/benchmarks/CUDA/MUM/mummergpu_exp.py → MUM/mummergpu_exp.py b/benchmarks/CUDA/MUM/mummergpu_exp.py → MUM/mummergpu_exp.py
diff --git a/benchmarks/CUDA/MUM/mummergpu_gold.cpp → MUM/mummergpu_gold.cpp b/benchmarks/CUDA/MUM/mummergpu_gold.cpp → MUM/mummergpu_gold.cpp
diff --git a/benchmarks/CUDA/MUM/mummergpu_kernel.cu → MUM/mummergpu_kernel.cu b/benchmarks/CUDA/MUM/mummergpu_kernel.cu → MUM/mummergpu_kernel.cu
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1 @@
		../bin/release/AES e 128 ./data/output.bmp ./data/key128.txt
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1 @@
		../bin/release/MUM ./data/NC_003997.20k.fna ./data/NC_003997_q25bp.50k.fna