Merge pull request #958 from mprobson/tex-template-integration

[ci skip] This build is based on 996b52f. This commit was created by the following CI build and job: https://github.com/greenelab/covid19-review/commit/996b52ffeb9ef8eabbc675cb62eca9ae08de811b/checks https://github.com/greenelab/covid19-review/runs/837511301
greenelab · May 13, 2021 · 041833e · 041833e
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@@ -56,7 +56,7 @@
   <meta name="author" content="Yusha Sun" />
   <meta name="author" content="Daniel S. Himmelstein" />
   <meta name="author" content="Jeremy P. Kamil" />
-  <meta name="dcterms.date" content="2021-05-12" />
+  <meta name="dcterms.date" content="2021-05-13" />
   <meta name="keywords" content="covid-19, coronavirus, pandemic, viral infection" />
   <title>SARS-CoV-2 and COVID-19: An Evolving Review of Diagnostics and Therapeutics</title>
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@@ -98,8 +98,8 @@
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-  <meta name="dc.date" content="2021-05-12" />
-  <meta name="citation_publication_date" content="2021-05-12" />
+  <meta name="dc.date" content="2021-05-13" />
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@@ -324,10 +324,10 @@ <h1 class="title">SARS-CoV-2 and COVID-19: An Evolving Review of Diagnostics and
 </header>
 <p><small><em>
 This manuscript
-(<a href="https://greenelab.github.io/covid19-review/v/3fcf4d72299ced1f5b6b4593033e1fa8e1e6f31a/">permalink</a>)
+(<a href="https://greenelab.github.io/covid19-review/v/996b52ffeb9ef8eabbc675cb62eca9ae08de811b/">permalink</a>)
 was automatically generated
-from <a href="https://github.com/greenelab/covid19-review/tree/3fcf4d72299ced1f5b6b4593033e1fa8e1e6f31a">greenelab/covid19-review@3fcf4d7</a>
-on May 12, 2021.
+from <a href="https://github.com/greenelab/covid19-review/tree/996b52ffeb9ef8eabbc675cb62eca9ae08de811b">greenelab/covid19-review@996b52f</a>
+on May 13, 2021.
 Snapshots of individual sections are available as preprints <span class="citation" data-cites="r366f5T3 1B22G6dja cifK9B8t">[<a href="#ref-r366f5T3" role="doc-biblioref">1</a>,<a href="#ref-1B22G6dja" role="doc-biblioref">2</a>,<a href="#ref-cifK9B8t" role="doc-biblioref">3</a>]</span>.
 </em></small></p>
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@@ -10809,7 +10809,7 @@ <h1 class="page_break_before" data-number="16" id="appendix-d"><span class="head
 <div class="csl-left-margin">79. </div><div class="csl-right-inline"><strong>Heparin and Heparan Sulfate: Analyzing Structure and Microheterogeneity</strong> <div class="csl-block">Zachary Shriver, Ishan Capila, Ganesh Venkataraman, Ram Sasisekharan</div> <em>Handbook of Experimental Pharmacology</em> (2012) <a href="https://doi.org/gjgp97">https://doi.org/gjgp97</a> <div class="csl-block">DOI: <a href="https://doi.org/10.1007/978-3-642-23056-1_8">10.1007/978-3-642-23056-1_8</a> · PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/22566225">22566225</a> · PMCID: <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3755452">PMC3755452</a></div></div>
 </div>
 <div id="ref-ZVyaYX2h" class="csl-entry" role="doc-biblioentry">
-<div class="csl-left-margin">80. </div><div class="csl-right-inline"><strong>The Pulmonary Endothelial Glycocalyx in ARDS: A Critical Role for Heparan Sulfate</strong> <div class="csl-block">Wells B LaRivière, Eric P Schmidt</div> <em>Current Topics in Membranes</em> (2018) <a href="https://doi.org/gjgp98">https://doi.org/gjgp98</a> <div class="csl-block">DOI: <a href="https://doi.org/10.1016/bs.ctm.2018.08.005">10.1016/bs.ctm.2018.08.005</a> · PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/30360782">30360782</a></div></div>
+<div class="csl-left-margin">80. </div><div class="csl-right-inline"><strong>The Pulmonary Endothelial Glycocalyx in ARDS: A Critical Role for Heparan Sulfate</strong> <div class="csl-block">Wells B LaRivière, Eric P Schmidt</div> <em>Current Topics in Membranes</em> (2018) <a href="https://doi.org/gjgp98">https://doi.org/gjgp98</a> <div class="csl-block">DOI: <a href="https://doi.org/10.1016/bs.ctm.2018.08.005">10.1016/bs.ctm.2018.08.005</a> · PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/30360782">30360782</a> · ISBN: <a href="https://worldcat.org/isbn/9780128158067">9780128158067</a></div></div>
 </div>
 <div id="ref-1FNCN2CC4" class="csl-entry" role="doc-biblioentry">
 <div class="csl-left-margin">81. </div><div class="csl-right-inline"><strong>Heparan sulfate assists SARS-CoV-2 in cell entry and can be targeted by approved drugs in vitro</strong> <div class="csl-block">Qi Zhang, Catherine Zhengzheng Chen, Manju Swaroop, Miao Xu, Lihui Wang, Juhyung Lee, Amy Qiu Wang, Manisha Pradhan, Natalie Hagen, Lu Chen, … Yihong Ye</div> <em>Cell Discovery</em> (2020-11-04) <a href="https://doi.org/gjgqbd">https://doi.org/gjgqbd</a> <div class="csl-block">DOI: <a href="https://doi.org/10.1038/s41421-020-00222-5">10.1038/s41421-020-00222-5</a> · PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/33298900">33298900</a> · PMCID: <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7610239">PMC7610239</a></div></div>
@@ -12649,7 +12649,7 @@ <h1 class="page_break_before" data-number="16" id="appendix-d"><span class="head
 <div class="csl-left-margin">691. </div><div class="csl-right-inline"><strong>Coronavirus Vaccine Tracker</strong> <div class="csl-block">Carl Zimmer, Jonathan Corum, Sui-Lee Wee</div> <em>The New York Times</em> <a href="https://www.nytimes.com/interactive/2020/science/coronavirus-vaccine-tracker.html">https://www.nytimes.com/interactive/2020/science/coronavirus-vaccine-tracker.html</a></div>
 </div>
 <div id="ref-DQmAgN0V" class="csl-entry" role="doc-biblioentry">
-<div class="csl-left-margin">692. </div><div class="csl-right-inline"><strong>Bloomberg - Are you a robot?</strong> <a href="https://www.bloomberg.com/tosv2.html?vid=&amp;uuid=a2562b30-b36f-11eb-84f4-01b1ea7c44fb&amp;url=L2dyYXBoaWNzL2NvdmlkLXZhY2NpbmUtdHJhY2tlci1nbG9iYWwtZGlzdHJpYnV0aW9u">https://www.bloomberg.com/tosv2.html?vid=&amp;uuid=a2562b30-b36f-11eb-84f4-01b1ea7c44fb&amp;url=L2dyYXBoaWNzL2NvdmlkLXZhY2NpbmUtdHJhY2tlci1nbG9iYWwtZGlzdHJpYnV0aW9u</a></div>
+<div class="csl-left-margin">692. </div><div class="csl-right-inline"><strong>Bloomberg - Are you a robot?</strong> <a href="https://www.bloomberg.com/tosv2.html?vid=&amp;uuid=1745c700-b395-11eb-84f8-017d3904f8b4&amp;url=L2dyYXBoaWNzL2NvdmlkLXZhY2NpbmUtdHJhY2tlci1nbG9iYWwtZGlzdHJpYnV0aW9u">https://www.bloomberg.com/tosv2.html?vid=&amp;uuid=1745c700-b395-11eb-84f8-017d3904f8b4&amp;url=L2dyYXBoaWNzL2NvdmlkLXZhY2NpbmUtdHJhY2tlci1nbG9iYWwtZGlzdHJpYnV0aW9u</a></div>
 </div>
 <div id="ref-gsNWcXHn" class="csl-entry" role="doc-biblioentry">
 <div class="csl-left-margin">693. </div><div class="csl-right-inline"><strong>Sputnik V, Covishield, Covaxin: What we know about India's Covid-19 vaccines</strong> <div class="csl-block">BBC News</div> (2021-04-14) <a href="https://www.bbc.com/news/world-asia-india-55748124">https://www.bbc.com/news/world-asia-india-55748124</a></div>
@@ -13271,7 +13271,7 @@ <h1 class="page_break_before" data-number="16" id="appendix-d"><span class="head
 <div class="csl-left-margin">897. </div><div class="csl-right-inline"><strong>Coronavirus (COVID-19) Vaccinations - Statistics and Research</strong> <div class="csl-block">Our World in Data</div> <a href="https://ourworldindata.org/covid-vaccinations">https://ourworldindata.org/covid-vaccinations</a></div>
 </div>
 <div id="ref-uvQMgFXB" class="csl-entry" role="doc-biblioentry">
-<div class="csl-left-margin">898. </div><div class="csl-right-inline"><strong>Bloomberg - Are you a robot?</strong> <a href="https://www.bloomberg.com/tosv2.html?vid=&amp;uuid=a2732910-b36f-11eb-8346-55949447a1d9&amp;url=L25ld3MvYXJ0aWNsZXMvMjAyMC0xMi0wMi93aXRoaW4taG91cnMtb2YtdS1rLXB1dGluLW9yZGVycy1zdGFydC1vZi1tYXNzLWNvdmlkLTE5LXNob3Rz">https://www.bloomberg.com/tosv2.html?vid=&amp;uuid=a2732910-b36f-11eb-8346-55949447a1d9&amp;url=L25ld3MvYXJ0aWNsZXMvMjAyMC0xMi0wMi93aXRoaW4taG91cnMtb2YtdS1rLXB1dGluLW9yZGVycy1zdGFydC1vZi1tYXNzLWNvdmlkLTE5LXNob3Rz</a></div>
+<div class="csl-left-margin">898. </div><div class="csl-right-inline"><strong>Bloomberg - Are you a robot?</strong> <a href="https://www.bloomberg.com/tosv2.html?vid=&amp;uuid=17a91cb0-b395-11eb-8a56-b7d574583e8f&amp;url=L25ld3MvYXJ0aWNsZXMvMjAyMC0xMi0wMi93aXRoaW4taG91cnMtb2YtdS1rLXB1dGluLW9yZGVycy1zdGFydC1vZi1tYXNzLWNvdmlkLTE5LXNob3Rz">https://www.bloomberg.com/tosv2.html?vid=&amp;uuid=17a91cb0-b395-11eb-8a56-b7d574583e8f&amp;url=L25ld3MvYXJ0aWNsZXMvMjAyMC0xMi0wMi93aXRoaW4taG91cnMtb2YtdS1rLXB1dGluLW9yZGVycy1zdGFydC1vZi1tYXNzLWNvdmlkLTE5LXNob3Rz</a></div>
 </div>
 <div id="ref-Vwv7l7Hd" class="csl-entry" role="doc-biblioentry">
 <div class="csl-left-margin">899. </div><div class="csl-right-inline"><strong>Facing Record Covid-19 Case Rise, Russia Rolls Out Sputnik V Vaccine</strong> <div class="csl-block">James Rodgers</div> <em>Forbes</em> <a href="https://www.forbes.com/sites/jamesrodgerseurope/2020/12/05/facing-record-covid-19-case-rise-russia-rolls-out-sputnik-v-vaccine/">https://www.forbes.com/sites/jamesrodgerseurope/2020/12/05/facing-record-covid-19-case-rise-russia-rolls-out-sputnik-v-vaccine/</a></div>

diff --git a/manuscript.md b/manuscript.md
@@ -6,7 +6,7 @@ keywords:
 - pandemic
 - viral infection
 lang: en-US
-date-meta: '2021-05-12'
+date-meta: '2021-05-13'
 author-meta:
 - Halie M. Rando
 - Casey S. Greene
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 <small><em>
 This manuscript
-([permalink](https://greenelab.github.io/covid19-review/v/3fcf4d72299ced1f5b6b4593033e1fa8e1e6f31a/))
+([permalink](https://greenelab.github.io/covid19-review/v/996b52ffeb9ef8eabbc675cb62eca9ae08de811b/))
 was automatically generated
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+from [greenelab/covid19-review@996b52f](https://github.com/greenelab/covid19-review/tree/996b52ffeb9ef8eabbc675cb62eca9ae08de811b)
+on May 13, 2021.
 Snapshots of individual sections are available as preprints [@individual-pathogenesis; @individual-nutraceuticals; @individual-pharmaceuticals].
 </em></small>
 

diff --git a/manuscript.pdf b/manuscript.pdf
diff --git a/references.json b/references.json
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