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shorten and slacken ODE solver tests
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goldingn committed Nov 13, 2024
1 parent 7dbe80c commit 1051d9b
Showing 1 changed file with 7 additions and 8 deletions.
15 changes: 7 additions & 8 deletions tests/testthat/test_ode_solve.R
Original file line number Diff line number Diff line change
Expand Up @@ -40,7 +40,7 @@ test_that("ode_solve works like deSolve::ode", {
) # mmol/m3, carrying capacity

yini <- c(Prey = 1, Predator = 2)
times <- seq(0, 200, by = 1)
times <- seq(0, 50, by = 1)

# loop through the solvers (ode45 should be similar to the dopri5 method in TF)
methods <- c("bdf", "dp")
Expand Down Expand Up @@ -76,12 +76,11 @@ test_that("ode_solve works like deSolve::ode", {

difference_bdf <- abs(greta_bdf - desolve_bdf)
difference_dp <- abs(greta_dp - desolve_dp)
# TODO
# These values start out a little bit different, I'm wondering if
# we should discard the first 10 time stamps or so? Or reduce our
# expectation down to < 1e-2?
expect_true(all(difference_bdf < 1e-4))
expect_true(all(difference_dp < 1e-4))

# these aren't a great match (during regions of rapid change), apparently due
# to hard-coded differences in implementation between deSolve and TFP
expect_true(all(difference_bdf < 1e-2))
expect_true(all(difference_dp < 1e-2))

})

Expand Down Expand Up @@ -110,7 +109,7 @@ test_that("inference works with ode_solve", {
K <- uniform(0, 30) # mmol/m3, carrying capacity

yini <- c(Prey = 1, Predator = 2)
times <- seq(0, 200, by = 1)
times <- seq(0, 50, by = 1)

y <- ode_solve(lotka_volterra,
y0 = t(yini),
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