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Ranch #316

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Ranch #316

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Commits on Oct 25, 2017

  1. JHK; lohSpec S4 scripts

    Jason Kunisaki authored and Jason Kunisaki committed Oct 25, 2017
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Commits on Oct 27, 2017

  1. lohSpec functions

    Jason Kunisaki authored and Jason Kunisaki committed Oct 27, 2017
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Commits on Dec 20, 2017

  1. lohspec 12/19

    Jason Kunisaki authored and Jason Kunisaki committed Dec 20, 2017
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Commits on Jan 9, 2018

  1. loh

    Jason Kunisaki authored and Jason Kunisaki committed Jan 9, 2018
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Commits on Jan 26, 2018

  1. lohSpec and combined cn/loh plots

    Jason Kunisaki authored and Jason Kunisaki committed Jan 26, 2018
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  2. commit

    Jason Kunisaki authored and Jason Kunisaki committed Jan 26, 2018
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  3. commit

    Jason Kunisaki authored and Jason Kunisaki committed Jan 26, 2018
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  4. commit

    Jason Kunisaki authored and Jason Kunisaki committed Jan 26, 2018
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Commits on Jan 29, 2018

  1. finish combined cn/loh plots

    Jason Kunisaki authored and Jason Kunisaki committed Jan 29, 2018
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  2. commit

    Jason Kunisaki authored and Jason Kunisaki committed Jan 29, 2018
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Commits on Apr 20, 2018

  1. Structural Variant function update

    Jason Kunisaki authored and Jason Kunisaki committed Apr 20, 2018
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Commits on Apr 24, 2018

  1. Structural Variant Update

    Jason kunisaki authored and Jason kunisaki committed Apr 24, 2018
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Commits on Apr 25, 2018

  1. Structural variant function update - allow for DEL/DUP/INV/INS to be … 

    …plotted
    Jason kunisaki authored and Jason kunisaki committed Apr 25, 2018
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Commits on Apr 30, 2018

  1. Structural Variant Input Parameter Checks

    Jason Kunisaki authored and Jason Kunisaki committed Apr 30, 2018
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Commits on May 1, 2018

  1. sv update

    Jason kunisaki authored and Jason kunisaki committed May 1, 2018
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  2. sv update

    Jason kunisaki authored and Jason kunisaki committed May 1, 2018
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  3. sv update

    Jason Kunisaki authored and Jason Kunisaki committed May 1, 2018
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  4. sv update

    Jason Kunisaki authored and Jason Kunisaki committed May 1, 2018
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  5. sv update

    Jason Kunisaki authored and Jason Kunisaki committed May 1, 2018
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  6. sv update

    Jason Kunisaki authored and Jason Kunisaki committed May 1, 2018
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Commits on May 2, 2018

  1. Update SV function, allow for Lumpy input. 

    Write input parameter checks for each of the new functions (lohSpec and combinedCnLOH).
    Jason Kunisaki authored and Jason Kunisaki committed May 2, 2018
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Commits on May 4, 2018

  1. Update to combined cn/somatic loh/germline loh plot function. Allow f… 

    …or multiple samples and chromosomes to be plotted at once. Also put in constructor to check input parameters for lohSpec and combined cn/loh function.
    Jason Kunisaki authored and Jason Kunisaki committed May 4, 2018
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