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Issues: gt1/biobambam2

27 Open 43 Closed
27 Open 43 Closed
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Issues list

failed to find libmaus2
#74 opened Jun 29, 2018 by kemin711
8
Feature request: bamsormadup quality filter
#73 opened May 17, 2018 by matthdsm
bamsort: Query name contains illegal symbols
#72 opened Apr 13, 2018 by mmokrejs
bamsort crash at libmaus2::lz::BgzfDeflateParallel::flush
#71 opened Apr 12, 2018 by mmokrejs
4
bamsort-2.0.87: input reading gets stuck
#70 opened Mar 27, 2018 by mmokrejs
Invalid @PG line
#69 opened Mar 12, 2018 by SergejN
Is REF_PATH/REF_CACHE used for reading CRAM?
#68 opened Mar 10, 2018 by keiranmraine
1
Controlling number of temporary files for bamsormadup
#67 opened Feb 27, 2018 by chapmanb
Support for positions values up to 2^31 (=according to BAM spec) instead of 2^29
#66 opened Feb 23, 2018 by WimSpee
5
bammerge - additional decompression threads?
#62 opened Jan 25, 2018 by keiranmraine
Invalid alignment: Query name contains illegal symbols
#61 opened Jan 24, 2018 by mmokrejs
Any Option for bamsort in Parallel?
#59 opened Jan 21, 2018 by spikeliu
6
bamcollate2 not reporting all reads
#58 opened Dec 26, 2017 by mirahan
2
bam2fastq failed
#56 opened Dec 17, 2017 by lmanchon
8
bammarkduplicates vs bammarkduplicates2 documentation
#55 opened Dec 16, 2017 by jeffbhasin
3
Feature request: split by chromosome
#52 opened Oct 26, 2017 by jasper1918
2
"Too many open files"
#50 opened Sep 8, 2017 by map2085
4
FYI: biobambam2 on dockstore.org
#48 opened Jun 2, 2017 by keiranmraine
bammerge: Accept wildcard regexp when parsing I= input
#46 opened Apr 25, 2017 by mmokrejs
2
Do not crash if no argument was provided
#45 opened Apr 25, 2017 by mmokrejs
1
Improving documentation and commandline argument names/behavior
#41 opened Feb 20, 2017 by mmokrejs
bamclipreinsert error when the sequence contains a single base with a quality of 9
#39 opened Jan 23, 2017 by srl147
4
bammarkduplicates2 - improving throughput
#38 opened Nov 30, 2016 by keiranmraine
bamtofastq - is multi-thread possible?
#37 opened Nov 29, 2016 by keiranmraine
High memory usage for bamsormadup on inputs with many reference contigs
#33 opened Oct 17, 2016 by chapmanb
2
ProTip! What’s not been updated in a month: updated:<2024-09-25.