Fix [hopefully] documentation failure (#4901) #5627
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| name: run small inference workflow using pegasus + condor | |
| on: [push, pull_request] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - uses: actions/checkout@v1 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.10' | |
| - name: install condor | |
| run: | | |
| wget -qO - https://research.cs.wisc.edu/htcondor/ubuntu/HTCondor-Release.gpg.key | sudo apt-key add - | |
| echo "deb http://research.cs.wisc.edu/htcondor/ubuntu/8.9/focal focal contrib" | sudo tee -a /etc/apt/sources.list | |
| echo "deb-src http://research.cs.wisc.edu/htcondor/ubuntu/8.9/focal focal contrib" | sudo tee -a /etc/apt/sources.list | |
| sudo apt-get -o Acquire::Retries=3 update | |
| sudo apt-get -o Acquire::Retries=3 install minihtcondor | |
| sudo systemctl start condor | |
| sudo systemctl enable condor | |
| - name: install pegasus | |
| run: | | |
| wget -qO - https://download.pegasus.isi.edu/pegasus/gpg.txt | sudo apt-key add - | |
| echo "deb https://download.pegasus.isi.edu/pegasus/ubuntu bionic main" | sudo tee -a /etc/apt/sources.list | |
| sudo apt-get -o Acquire::Retries=3 update | |
| sudo apt-get -o Acquire::Retries=3 install pegasus=5.0.8-1+ubuntu18 | |
| - run: sudo apt-get -o Acquire::Retries=3 install *fftw3* intel-mkl* | |
| - name: Install pycbc | |
| run: | | |
| python -m pip install --upgrade 'pip<22.0' setuptools | |
| pip install GitPython # This shouldn't really be needed! | |
| pip install -r requirements.txt | |
| pip install . | |
| - name: retrieving data | |
| run: bash -e examples/inference/single/get.sh | |
| - name: generating, submitting and running workflow | |
| run: | | |
| cp examples/inference/single/single.ini ./ | |
| cp examples/workflow/inference/small_test/*.ini ./ | |
| bash -e examples/workflow/inference/small_test/gen.sh | |
| condor_status | |
| cd gw_output | |
| bash -e ../examples/search/submit.sh | |
| ./status | |
| python ../examples/search/check_job.py | |
| find submitdir/work/ -type f -name '*.tar.gz' -delete | |
| - name: store log files | |
| if: always() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: logs | |
| path: gw_output/submitdir/work | |
| - name: store result page | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: results | |
| path: html |