several bug fixes #34
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| --- | |
| name: CI | |
| on: # yamllint disable-line rule:truthy | |
| push: | |
| branches: | |
| - main | |
| - develop | |
| - x-calib-nopeak-find | |
| pull_request: | |
| branches: | |
| - main | |
| - develop | |
| tags: | |
| - v*.*.* | |
| workflow_dispatch: | |
| env: | |
| POETRY_VERSION: 1.8.3 | |
| REGISTRY: ghcr.io | |
| IMAGE_NAME: ${{ github.repository }} | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: | |
| - '3.9' | |
| - '3.10' | |
| - '3.11' | |
| - '3.12' | |
| steps: | |
| - name: Checkout the repository | |
| uses: actions/[email protected] | |
| - name: Setup Python | |
| uses: actions/[email protected] | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Get the precise Python version | |
| run: echo "PYTHON_ID=$( python -VV | sha256sum | awk '{ print $1 }' )" >> "$GITHUB_ENV" | |
| - name: Load the cached Poetry installation | |
| id: cached-poetry | |
| uses: actions/[email protected] | |
| with: | |
| path: ~/.local | |
| key: poetry-${{ env.POETRY_VERSION }}-py_${{ env.PYTHON_ID}}-0 | |
| - name: Install Poetry | |
| if: steps.cached-poetry.outputs.cache-hit != 'true' | |
| uses: snok/[email protected] | |
| with: | |
| version: ${{ env.POETRY_VERSION }} | |
| virtualenvs-create: true | |
| virtualenvs-in-project: true | |
| - name: Load the cached dependencies | |
| id: cached-deps | |
| uses: actions/[email protected] | |
| with: | |
| path: .venv | |
| key: py${{ matrix.python-version }}-deps-${{ hashFiles('**/poetry.lock') }} | |
| - name: Install dependencies | |
| if: steps.cached-deps.outputs.cache-hit != 'true' | |
| run: poetry install --no-interaction | |
| - name: Run pre-commit | |
| run: >- | |
| if [[ $GITHUB_REF == refs/heads/main ]]; then | |
| SKIP=no-commit-to-branch poetry run pre-commit run --all-files | |
| elif [[ $GITHUB_REF == refs/heads/x-calib-nopeak-find ]]; then | |
| echo 'Skipping pre-commit.' | |
| else | |
| poetry run pre-commit run --all-files | |
| fi | |
| - name: Run tests | |
| env: | |
| COVERAGE_FILE: .coverage.${{ matrix.python-version }} | |
| run: >- | |
| if [[ $GITHUB_REF == refs/heads/x-calib-nopeak-find ]]; then | |
| echo 'Skipping tests.' | |
| else | |
| poetry run pytest --cov | |
| fi | |
| - name: Store the coverage report | |
| uses: actions/[email protected] | |
| if: github.ref != 'refs/heads/x-calib-nopeak-find' | |
| with: | |
| name: coverage-${{ matrix.python-version }} | |
| path: .coverage.${{ matrix.python-version }} | |
| coverage: | |
| runs-on: ubuntu-latest | |
| needs: test | |
| if: github.ref != 'refs/heads/x-calib-nopeak-find' | |
| permissions: | |
| pull-requests: write | |
| contents: write | |
| steps: | |
| - name: Checkout the repository | |
| uses: actions/[email protected] | |
| - name: Retrieve the coverage reports | |
| id: download | |
| uses: actions/[email protected] | |
| with: | |
| pattern: coverage-* | |
| merge-multiple: true | |
| - name: Process the coverage reports | |
| id: coverage_processing | |
| uses: py-cov-action/[email protected] | |
| with: | |
| COVERAGE_DATA_BRANCH: 'COVERAGE-REPORT' | |
| GITHUB_TOKEN: ${{ github.token }} | |
| MERGE_COVERAGE_FILES: true | |
| - name: Store the pull request coverage comment for later posting | |
| if: steps.coverage_processing.outputs.COMMENT_FILE_WRITTEN == 'true' | |
| uses: actions/[email protected] | |
| with: | |
| name: python-coverage-comment-action | |
| path: python-coverage-comment-action.txt | |
| build: | |
| runs-on: ubuntu-latest | |
| needs: test | |
| permissions: | |
| contents: read | |
| packages: write | |
| # This is used to complete the identity challenge | |
| # with sigstore/fulcio when running outside of PRs. | |
| id-token: write | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/[email protected] | |
| # Install the cosign tool except on PR | |
| # https://github.com/sigstore/cosign-installer | |
| - name: Install cosign | |
| if: github.event_name != 'pull_request' | |
| uses: sigstore/[email protected] | |
| with: | |
| cosign-release: 'v2.2.4' | |
| # Workaround: https://github.com/docker/build-push-action/issues/461 | |
| - name: Setup Docker buildx | |
| uses: docker/[email protected] | |
| # Login against a Docker registry except on PR | |
| # https://github.com/docker/login-action | |
| - name: Log into registry ${{ env.REGISTRY }} | |
| if: github.event_name != 'pull_request' | |
| uses: docker/[email protected] | |
| with: | |
| registry: ${{ env.REGISTRY }} | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| # Extract metadata (tags, labels) for Docker | |
| # https://github.com/docker/metadata-action | |
| - name: Extract Docker metadata | |
| id: meta | |
| uses: docker/[email protected] | |
| with: | |
| images: ${{ env.REGISTRY }}/${{ env.IMAGE_NAME }} | |
| labels: | | |
| org.opencontainers.image.description=Web-based spectra harmonization tool | |
| org.opencontainers.image.licenses=MIT | |
| org.opencontainers.image.title=spectrastream | |
| org.opencontainers.image.url=https://github.com/h2020charisma/spectrastream/blob/main/README.md | |
| org.opencontainers.image.vendor=IDEAconsult | |
| tags: | | |
| type=raw,value=latest,enable=${{ github.ref == 'refs/heads/x-calib-nopeak-find' }} | |
| type=raw,value=stable,enable=${{ github.ref == 'refs/heads/main' }} | |
| type=ref,event=branch | |
| type=ref,event=tag | |
| type=ref,event=pr | |
| # Build and push Docker image with Buildx (don't push on PR) | |
| # https://github.com/docker/build-push-action | |
| - name: Build and push Docker image | |
| id: build-and-push | |
| uses: docker/[email protected] | |
| with: | |
| cache-from: type=gha | |
| cache-to: type=gha,mode=max | |
| context: . | |
| labels: ${{ steps.meta.outputs.labels }} | |
| push: ${{ github.event_name != 'pull_request' }} | |
| tags: ${{ steps.meta.outputs.tags }} | |
| # Sign the resulting Docker image digest except on PRs. | |
| # This will only write to the public Rekor transparency log when the Docker | |
| # repository is public to avoid leaking data. If you would like to publish | |
| # transparency data even for private images, pass --force to cosign below. | |
| # https://github.com/sigstore/cosign | |
| - name: Sign the published Docker image | |
| if: github.event_name != 'pull_request' | |
| env: | |
| # https://docs.github.com/en/actions/security-guides/security-hardening-for-github-actions#using-an-intermediate-environment-variable | |
| TAGS: ${{ steps.meta.outputs.tags }} | |
| DIGEST: ${{ steps.build-and-push.outputs.digest }} | |
| # This step uses the identity token to provision an ephemeral certificate | |
| # against the sigstore community Fulcio instance. | |
| run: echo "${TAGS}" | xargs -I {} cosign sign --yes {}@${DIGEST} |