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chord v2.1.0 beta

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@luan-n-nguyen luan-n-nguyen released this 04 Oct 00:56
· 834 commits to master since this release

Beta 0:

  • Reimplemented mutSigExtractor R package in java

Beta 1:

  • Replace CHORD R package with an R script and java wrapper
  • Exclude variants where FILTER is '.' when selecting PASS variants

Beta 2:

  • Fix ChordDataPrep not working on hg38 by storing chromosomes from VCF as String rather than HumanChromosome