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cancer.initiation.model parameter in infer.clonal.models() #49

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LucasLiu20200131 opened this issue Jan 24, 2021 · 1 comment
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@LucasLiu20200131
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Hi, thanks for the wonderful tool you developed!
Can you help me deal with a issue? while I was using your example data from aml1$variants and the code you provided in the manual, everything was fine except infer.clonal.models(), I set the "cancer.initiation.model" parameter to "polyclonal", and then an error occurred as follow:

Finding consensus models across samples...
Found 1 consensus model(s)
Generating consensus clonal evolution trees across samples...
Found 1 consensus model(s)
Scoring models...
Error in $<-.data.frame(*tmp*, "clone.ccf.combined.p", value = c(0, :
replacement has 6 rows, data has 5

I will be really appreciated if you can help me, thanks again!

@FreyaVan
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FreyaVan commented Jul 30, 2021

polyclonal model need another color for clone 0. That means if you have 5 clone , asign 6 colors.

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