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34 Open 22 Closed
34 Open 22 Closed
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Issues list

Example trees.tsv and variants.tsv files
#59 opened Jun 6, 2023 by aklein-705
driver annotations on fishplot
#58 opened Apr 21, 2023 by mdiaz09
error in convert.consensus.tree.clone.to.branch
#57 opened Nov 23, 2022 by jsha129
4
No consensus multi-sample models provided.
#56 opened Aug 10, 2022 by pushpa-itagi
Questions about data input
#55 opened Jul 26, 2022 by xiw588
could not find "'tree.tsv' and 'variants.tsv' these two files
#54 opened Jun 22, 2022 by alextwc
build_tree/infer.clonal.models unused argument error
#53 opened Apr 1, 2022 by nfarnoud
Error in merge.clone.trees
#52 opened Feb 6, 2022 by kxxxjo
2
infer.clonal.models() no rows to aggregate
#51 opened Dec 1, 2021 by Aaron-sqw
2
Data visualization when inferring a polyclonal model
#50 opened Jul 19, 2021 by Psrwnsr
cancer.initiation.model parameter in infer.clonal.models()
#49 opened Jan 24, 2021 by LucasLiu20200131
1
Error in Generating consensus clonal evolution trees across samples
#48 opened Dec 25, 2020 by qindan2008
1
PyClone-vi output
#47 opened Dec 15, 2020 by DrBlanco-Heredia
1
[Help..] Found 0 consensus model(s)
#46 opened Oct 30, 2020 by biosurgeon
2
variants from primary tumors and metastasis tumors without normal controls
#45 opened Oct 28, 2020 by qindan2008
to repeat the example in the ClonEvol Tutorial by RGui4.0.2
#44 opened Sep 28, 2020 by nypeterju
estimate.clone.vaf
#42 opened Aug 24, 2020 by DrBlanco-Heredia
1
plot.all.trees.clone.as.branch -bug with branches name
#41 opened Aug 11, 2020 by qingjian1991
2
infer.clonal.models - bug with alternate cluster column names
#40 opened Jun 20, 2020 by iryxie
Can I still use clonevol on my data
#39 opened May 23, 2020 by MaryGoAround
4
Patients with only one sample
#38 opened May 21, 2020 by logan-leak
2
ERROR: No clonal models for sample, if founding.cluster = NULL bug
#36 opened Mar 11, 2020 by SoloveyMaria
1
combined p calculation number of rows do not agree
#35 opened Nov 6, 2019 by teng-gao
Error in infer.clonal.models: No clonal models for sample
#33 opened Oct 4, 2019 by hoonghim
5
Error in plot.clonal.models
#32 opened Sep 17, 2019 by fjgassner
1
ProTip! Exclude everything labeled bug with -label:bug.