DSF Upgrade From 0.7.0 to 0.9.0

Upgrading from 0.7.0

Upgrading the DSF from 0.7.0 to 0.9.0 involves replacing a config file, modifying the docker-compose.yml files, replacing the process plugins and recreating the containers.

If you are upgrading from 0.6.0 please see the Upgrade from 0.6.0 to 0.7.0 guide first.

Modify DSF FHIR Server Setup

Preparation / Backup
- We recommend to create a backup of the /opt/fhir directory before proceeding with the upgrade.
  For example using: sudo cp -rp /opt/fhir /opt/fhir_backup_pre_0.9.0_upgrade

Modify the DSF FHIR docker-compose.yml file, replace 0.7.0 with 0.9.0

@@ -1,7 +1,7 @@
 version: '3.8'
 services:
   proxy:
-    image: ghcr.io/highmed/fhir_proxy:0.7.0
+    image: ghcr.io/highmed/fhir_proxy:0.9.0
     restart: on-failure
     ports:
       - 127.0.0.1:80:80
@@ -27,7 +27,7 @@ services:
       - app
 
   app:
-    image: ghcr.io/highmed/fhir:0.7.0
+    image: ghcr.io/highmed/fhir:0.9.0
     restart: on-failure
     healthcheck:
       test: ["CMD", "java", "-cp", "dsf_fhir.jar", "org.highmed.dsf.fhir.StatusClient"]

Download prepared DSF FHIR server config files and extract/replace the external FHIR bundle

Test NUM-CODEX (non HiGHmed) instance: https://github.com/highmed/highmed-dsf/wiki/resources/dsf_codex_test_fhir_0_9_0.tar.gz

cd /opt
wget https://github.com/highmed/highmed-dsf/wiki/resources/dsf_codex_test_fhir_0_9_0.tar.gz
sudo tar --same-owner -zxvf dsf_codex_test_fhir_0_9_0.tar.gz fhir/conf/bundle.xml

Test HiGHmed instance: https://github.com/highmed/highmed-dsf/wiki/resources/dsf_highmed_test_fhir_0_9_0.tar.gz

cd /opt
wget https://github.com/highmed/highmed-dsf/wiki/resources/dsf_highmed_test_fhir_0_9_0.tar.gz
sudo tar --same-owner -zxvf dsf_highmed_test_fhir_0_9_0.tar.gz fhir/conf/bundle.xml

Production NUM-CODEX (non HiGHmed) instance: https://github.com/highmed/highmed-dsf/wiki/resources/dsf_codex_prod_fhir_0_9_0.tar.gz

cd /opt
wget https://github.com/highmed/highmed-dsf/wiki/resources/dsf_codex_prod_fhir_0_9_0.tar.gz
sudo tar --same-owner -zxvf dsf_codex_prod_fhir_0_9_0.tar.gz fhir/conf/bundle.xml

Production HiGHmed instance: https://github.com/highmed/highmed-dsf/wiki/resources/dsf_highmed_prod_fhir_0_9_0.tar.gz

cd /opt
wget https://github.com/highmed/highmed-dsf/wiki/resources/dsf_highmed_prod_fhir_0_9_0.tar.gz
sudo tar --same-owner -zxvf dsf_highmed_prod_fhir_0_9_0.tar.gz fhir/conf/bundle.xml

The command will update the external FHIR bundle at /opt/fhir/conf/bundle.xml

The output of the tar command should be

fhir/conf/bundle.xml

Upgrade the DSF FHIR containers
From /opt/fhir execute
```
docker-compose up -d && docker-compose logs -f
```

Modify DSF BPE Server Setup

Preparation / Backup
- We recommend to create a backup of the /opt/bpe directory before proceeding with the upgrade.
  For example using: sudo cp -rp /opt/bpe /opt/bpe_backup_pre_0.9.0_upgrade

Modify the DSF BPE docker-compose.yml file

NUM-CODEX (non HiGHmed) instance:
Change the bpe container version from 0.7.0 to 0.9.0, update the process exclude config and remove a bind mount

@@ -1,7 +1,7 @@
 version: '3.8'
 services:
   app:
-    image: ghcr.io/highmed/bpe:0.7.0
+    image: ghcr.io/highmed/bpe:0.9.0
     restart: on-failure
     healthcheck:
       test: ["CMD", "java", "-cp", "dsf_bpe.jar", "org.highmed.dsf.bpe.StatusClient"]
@@ -29,9 +29,6 @@ services:
       - type: bind
         source: ./log
         target: /opt/bpe/log
-      - type: bind
-        source: ./last_event
-        target: /opt/bpe/last_event
       - type: bind
         source: ./cache
         target: /opt/bpe/cache
@@ -48,8 +45,8 @@ services:
       ORG_HIGHMED_DSF_BPE_FHIR_SERVER_ORGANIZATION_IDENTIFIER_VALUE: TODO_ORGANIZATION_IDENTIFIER
       ORG_HIGHMED_DSF_BPE_FHIR_SERVER_BASE_URL: https://TODO_DSF_FRIR_SERVER_FQDN/fhir
       ORG_HIGHMED_DSF_BPE_PROCESS_EXCLUDED: |
-        wwwnetzwerk-universitaetsmedizinde_dataTranslate/0.6.0
-        wwwnetzwerk-universitaetsmedizinde_dataReceive/0.6.0
+        wwwnetzwerk-universitaetsmedizinde_dataTranslate/0.7.0
+        wwwnetzwerk-universitaetsmedizinde_dataReceive/0.7.0

       #TODO modify ORG_HIGHMED_DSF_BPE_PROCESS_EXCLUDED for later process versions
       #TODO add process specific environment variables, see process documentation

HiGHmed instance:
Change the bpe container version from 0.7.0 to 0.9.0, update the process exclude config, and remove a bind mount

@@ -1,7 +1,7 @@
 version: '3.8'
 services:
   app:
-    image: ghcr.io/highmed/bpe:0.7.0
+    image: ghcr.io/highmed/bpe:0.9.0
     restart: on-failure
     healthcheck:
       test: ["CMD", "java", "-cp", "dsf_bpe.jar", "org.highmed.dsf.bpe.StatusClient"]
@@ -29,9 +29,6 @@ services:
       - type: bind
         source: ./log
         target: /opt/bpe/log
-      - type: bind
-        source: ./last_event
-        target: /opt/bpe/last_event
       - type: bind
         source: ./psn
         target: /opt/bpe/psn
@@ -51,11 +48,11 @@ services:
       ORG_HIGHMED_DSF_BPE_FHIR_SERVER_ORGANIZATION_IDENTIFIER_VALUE: TODO_ORGANIZATION_IDENTIFIER
       ORG_HIGHMED_DSF_BPE_FHIR_SERVER_BASE_URL: https://TODO_DSF_FRIR_SERVER_FQDN/fhir
       ORG_HIGHMED_DSF_BPE_PROCESS_EXCLUDED: |
-        highmedorg_computeFeasibility/0.6.0
-        highmedorg_computeDataSharing/0.6.0
-        highmedorg_updateAllowList/0.6.0
-        wwwnetzwerk-universitaetsmedizinde_dataTranslate/0.6.0
-        wwwnetzwerk-universitaetsmedizinde_dataReceive/0.6.0
+        highmedorg_computeFeasibility/0.7.0
+        highmedorg_computeDataSharing/0.7.0
+        highmedorg_updateAllowList/0.7.0
+        wwwnetzwerk-universitaetsmedizinde_dataTranslate/0.7.0
+        wwwnetzwerk-universitaetsmedizinde_dataReceive/0.7.0

       #TODO modify ORG_HIGHMED_DSF_BPE_PROCESS_EXCLUDED for later process versions
       #TODO add process specific environment variables, see process documentation

Upgrade DSF Plugins and Process-Plugins
- NUM-CODEX (non HiGHmed) instance:
  - Process plugins in /opt/bpe/process:
    1. Replace codex-process-data-transfer-0.6.0.jar with codex-process-data-transfer-0.7.0.jar from the latest NUM-CODEX processes release
    2. Replace dsf-bpe-process-ping-0.6.0.jar with dsf-bpe-process-ping-0.7.0.jar from the latest HiGHmed processes release
    Make sure the process plugins in /opt/bpe/process are configured with chmod 440 and chown root:bpe.
- HiGHmed instance:
  - Process plugins in /opt/bpe/process:
    1. Replace codex-process-data-transfer-0.6.0.jar with codex-process-data-transfer-0.7.0.jar from the latest NUM-CODEX processes release
    2. Replace dsf-bpe-process-data-sharing-0.6.0.jar with dsf-bpe-process-data-sharing-0.7.0.jar from the latest HiGHmed processes release
    3. Replace dsf-bpe-process-feasibility-0.6.0.jar with dsf-bpe-process-feasibility-0.7.0.jar from the latest HiGHmed processes release
    4. Replace dsf-bpe-process-feasibility-mpc-0.6.0.jar with dsf-bpe-process-feasibility-mpc-0.7.0.jar from the latest HiGHmed processes release
    5. Replace dsf-bpe-process-local-services-0.6.0.jar with dsf-bpe-process-local-services-0.7.0.jar from the latest HiGHmed processes release
    6. Replace dsf-bpe-process-ping-0.6.0.jar with dsf-bpe-process-ping-0.7.0.jar from the latest HiGHmed processes release
    7. Replace dsf-bpe-process-update-allow-list-0.6.0.jar with dsf-bpe-process-update-allow-list-0.7.0.jar from the latest HiGHmed processes release
    Make sure the process plugins in /opt/bpe/process are configured with chmod 440 and chown root:bpe.
  - Plugins in '/opt/bpe/plugin':
    1. If you are using the provided PDQ MPI Client, replace dsf-mpi-client-pdq-0.7.0.jar, hapi-base-2.3.jar and hapi-structures-v25-2.3.jar with the new files from dsf-mpi-client-pdq-0.9.0.zip, see DSF release notes
    2. If you are using the provided openEHR Client, replace dsf-openehr-client-impl-0.7.0.jar with the new file from dsf-openehr-client-impl-0.9.0.zip, see DSF release notes
    Make sure the plugins in /opt/bpe/plugin are configured with chmod 440 and chown root:bpe.
Upgrade the DSF BPE containers
From /opt/bpe execute
```
docker-compose up -d && docker-compose logs -f
```
Verify your upgrade:
- Verify the DSF FHIR server is running in version 0.9.0. The log should contain a message:
  INFO main - BuildInfoReaderImpl.logBuildInfo(137) | Artifact: dsf-fhir-server-jetty, version: 0.9.0, [...]
- Verify the DSF FHIR server started without errors
- Verify the DSF FHIR server is accessible via https, for example by browsing to https://your-dsf-endpoint.de/fhir/ (authentication with your client-certificate)
- Verify the DSF BPE server is running in version 0.9.0. The log should contain a message:
  INFO main - BuildInfoReaderImpl.logBuildInfo(137) | Artifact: dsf-bpe-server-jetty, version: 0.9.0, [...]
- Verify the DSF BPE server started without errors
- Verify the DSF BPE server removed ActivityDefinition resources for the deleted process plugin from the DSF FHIR server and created new ActivityDefinition for the new process plugin.
- Verify your install with a ping/pong test
  For a Task resource compatible with the 0.7.0 release of the ping process, see the Ping/Pong process wiki.

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DSF Upgrade From 0.7.0 to 0.9.0

Upgrading from 0.7.0

Modify DSF FHIR Server Setup

Modify DSF BPE Server Setup

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