feat: Add bedlike file support (#138)

higlass · Oct 3, 2023 · f11c38d · f11c38d
1 parent f35dcd6
commit f11c38d
Show file tree

Hide file tree

Showing 2 changed files with 18 additions and 0 deletions.
diff --git a/src/higlass/__init__.py b/src/higlass/__init__.py
@@ -24,3 +24,4 @@
 cooler = _create_tileset_helper(server, higlass.tilesets.cooler)
 hitile = _create_tileset_helper(server, higlass.tilesets.hitile)
 bed2ddb = _create_tileset_helper(server, higlass.tilesets.bed2ddb)
+beddb = _create_tileset_helper(server, higlass.tilesets.beddb)
diff --git a/src/higlass/tilesets.py b/src/higlass/tilesets.py
@@ -100,6 +100,23 @@ def bigwig(filepath: str, uid: str):
     )
 
 
+@hash_absolute_filepath_as_default_uid
+def beddb(filepath: str, uid: str):
+    try:
+        from clodius.tiles.beddb import tiles, tileset_info
+    except ImportError:
+        raise ImportError(
+            'You must have `clodius` installed to use "vector" data-server.'
+        )
+
+    return LocalTileset(
+        datatype="vector",
+        tiles=functools.partial(tiles, filepath),
+        info=functools.partial(tileset_info, filepath),
+        uid=uid,
+    )
+
+
 @hash_absolute_filepath_as_default_uid
 def multivec(filepath: str, uid: str):
     try: