Update CI integration with NERSC #44
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| name: h5bench (HDF5 1.14.0) | |
| on: | |
| pull_request: | |
| workflow_dispatch: | |
| push: | |
| branches: | |
| - master | |
| jobs: | |
| h5bench: | |
| runs-on: ubuntu-20.04 | |
| container: | |
| image: hpcio/hdf5-1.14.0 | |
| timeout-minutes: 60 | |
| env: | |
| OMPI_ALLOW_RUN_AS_ROOT: 1 | |
| OMPI_ALLOW_RUN_AS_ROOT_CONFIRM: 1 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| submodules: true | |
| - name: Configuration | |
| run: | | |
| git config --global user.email "[email protected]" | |
| git config --global user.name "Github CI" | |
| - name: Dependencies | |
| run: | | |
| # VOL-ASYNC | |
| git clone --recursive https://github.com/hpc-io/vol-async.git --branch v1.7 /opt/vol-async | |
| - name: Build Argobots | |
| run: | | |
| export ABT_DIR=/opt/argobots | |
| cd /opt/vol-async/argobots | |
| ./autogen.sh | |
| ./configure --prefix=$ABT_DIR | |
| make -j 2 | |
| make install | |
| - name: Build VOL-ASYNC | |
| run: | | |
| export HDF5_DIR=/opt/hdf5 | |
| export ABT_DIR=/opt/argobots | |
| export ASYNC_DIR=/opt/vol-async | |
| cd $ASYNC_DIR | |
| mkdir build | |
| cd build | |
| cmake .. -DCMAKE_INSTALL_PREFIX=$ASYNC_DIR -DCMAKE_PREFIX_PATH=$HDF5_DIR -DENABLE_WRITE_MEMCPY=ON | |
| make | |
| make install | |
| - name: Test VOL-ASYNC | |
| run: | | |
| export HDF5_DIR=/opt/hdf5 | |
| export HDF5_HOME=$HDF5_DIR | |
| export ABT_DIR=/opt/argobots | |
| export ASYNC_DIR=/opt/vol-async | |
| export LD_LIBRARY_PATH=$ASYNC_DIR/lib:$HDF5_DIR/lib:$ABT_DIR/lib:$LD_LIBRARY_PATH | |
| export HDF5_PLUGIN_PATH="$ASYNC_DIR/include" | |
| export HDF5_VOL_CONNECTOR="async under_vol=0;under_info={}" | |
| cd $ASYNC_DIR/build | |
| export LD_PRELOAD=$ASYNC_DIR/lib/libh5async.so:$ABT_DIR/lib/libabt.so:$HDF5_DIR/lib/libhdf5.so | |
| ctest | |
| - name: Build h5bench SYNC | |
| run: | | |
| export HDF5_HOME=/opt/hdf5 | |
| mkdir build-sync | |
| cd build-sync | |
| cmake .. \ | |
| -DH5BENCH_ALL=ON | |
| make -j 2 | |
| sudo make install | |
| ldconfig | |
| - name: Build h5bench ASYNC | |
| run: | | |
| export HDF5_HOME=/opt/hdf5 | |
| export ABT_HOME=/opt/argobots | |
| export ASYNC_HOME=/opt/vol-async | |
| export LD_LIBRARY_PATH=$ASYNC_HOME/lib:$HDF5_HOME/lib:$ABT_HOME/lib:$LD_LIBRARY_PATH | |
| mkdir build-async | |
| cd build-async | |
| cmake .. \ | |
| -DWITH_ASYNC_VOL:BOOL=ON \ | |
| -DCMAKE_C_FLAGS="-I$ASYNC_HOME/include -L$ASYNC_HOME/lib" \ | |
| -DH5BENCH_ALL=ON | |
| make -j 2 | |
| sudo make install | |
| ldconfig | |
| - name: Test h5bench SYNC write/read | |
| run: | | |
| export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH | |
| cd build-sync | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/sync-write-read-contig-1d-small.json | |
| - name: Test h5bench SYNC write 1D contiguous (memory) strided (file) | |
| run: | | |
| export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH | |
| cd build-sync | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/sync-write-1d-contig-strided.json | |
| - name: Test h5bench SYNC write 1D contiguous (memory) contiguous (file) | |
| run: | | |
| export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH | |
| cd build-sync | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/sync-write-1d-contig-contig.json | |
| - name: Test h5bench SYNC write 1D contiguous (memory) interleaved (file) | |
| run: | | |
| export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH | |
| cd build-sync | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/sync-write-1d-contig-interleaved.json | |
| - name: Test h5bench SYNC write 1D interleaved (memory) contiguous (file) | |
| run: | | |
| export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH | |
| cd build-sync | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/sync-write-1d-interleaved-contig.json | |
| - name: Test h5bench SYNC write 1D interleaved (memory) interleaved (file) | |
| run: | | |
| export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH | |
| cd build-sync | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/sync-write-1d-interleaved-interleaved.json | |
| - name: Test h5bench SYNC write 2D contiguous (memory) contiguous (file) | |
| run: | | |
| export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH | |
| cd build-sync | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/sync-write-2d-contig-contig.json | |
| - name: Test h5bench SYNC write 2D contiguous (memory) interleaved (file) | |
| run: | | |
| export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH | |
| cd build-sync | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/sync-write-2d-contig-interleaved.json | |
| - name: Test h5bench SYNC write 2D interleaved (memory) contiguous (file) | |
| run: | | |
| export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH | |
| cd build-sync | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/sync-write-2d-interleaved-contig.json | |
| - name: Test h5bench SYNC write 2D interleaved (memory) interleaved (file) | |
| run: | | |
| export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH | |
| cd build-sync | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/sync-write-2d-interleaved-interleaved.json | |
| - name: Test h5bench SYNC write 3D contiguous (memory) contiguous (file) | |
| run: | | |
| export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH | |
| cd build-sync | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/sync-write-3d-contig-contig.json | |
| - name: Test h5bench SYNC read 1D contiguous (memory) contiguous (file) full | |
| run: | | |
| export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH | |
| cd build-sync | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/sync-write-1d-contig-contig-read-full.json | |
| - name: Test h5bench SYNC read 1D contiguous (memory) contiguous (file) partial | |
| run: | | |
| export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH | |
| cd build-sync | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/sync-write-1d-contig-contig-read-partial.json | |
| - name: Test h5bench SYNC read 1D contiguous (memory) contiguous (file) strided | |
| run: | | |
| export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH | |
| cd build-sync | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/sync-write-1d-contig-contig-read-strided.json | |
| - name: Test h5bench SYNC read 2D contiguous (memory) contiguous (file) full | |
| run: | | |
| export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH | |
| cd build-sync | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/sync-write-2d-contig-contig-read-full.json | |
| - name: Test h5bench SYNC read 3D contiguous (memory) contiguous (file) full | |
| run: | | |
| export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH | |
| cd build-sync | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/sync-write-2d-contig-contig-read-full.json | |
| - name: Test h5bench SYNC write unlimited | |
| run: | | |
| export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH | |
| cd build-sync | |
| ./h5bench --debug --abort-on-failure ../samples/sync-write-unlimited.json | |
| - name: Test h5bench SYNC overwrite | |
| run: | | |
| export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH | |
| cd build-sync | |
| ./h5bench --debug --abort-on-failure ../samples/sync-overwrite.json | |
| - name: Test h5bench SYNC append | |
| run: | | |
| export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH | |
| cd build-sync | |
| ./h5bench --debug --abort-on-failure ../samples/sync-append.json | |
| - name: Test h5bench SYNC exerciser | |
| run: | | |
| export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH | |
| cd build-sync | |
| ./h5bench --debug --abort-on-failure ../samples/sync-exerciser.json | |
| - name: Test h5bench SYNC metadata | |
| run: | | |
| export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH | |
| cd build-sync | |
| ./h5bench --debug --abort-on-failure ../samples/sync-metadata.json | |
| - name: Test h5bench SYNC amrex | |
| run: | | |
| export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH | |
| cd build-sync | |
| ./h5bench --debug --abort-on-failure ../samples/sync-amrex.json | |
| - name: Test h5bench SYNC openpmd | |
| run: | | |
| export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH | |
| cd build-sync | |
| ./h5bench --debug --abort-on-failure ../samples/sync-openpmd.json | |
| - name: Test h5bench SYNC e3sm | |
| run: | | |
| export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH | |
| cd build-sync | |
| ./h5bench --debug --abort-on-failure ../samples/sync-e3sm.json | |
| - name: Test h5bench SYNC macsio | |
| run: | | |
| export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH | |
| cd build-sync | |
| ./h5bench --debug --abort-on-failure ../samples/sync-macsio.json | |
| - name: Test h5bench ASYNC write/read | |
| run: | | |
| export HDF5_DIR=/opt/hdf5 | |
| export ABT_DIR=/opt/argobots | |
| export ASYNC_DIR=/opt/vol-async | |
| export HDF5_ASYNC_MAX_MEM_MB=1024 | |
| cd build-async | |
| python3 ../samples/update.py ../samples/async-write-read-contig-1d-small.json | |
| ./h5bench --debug --abort-on-failure ../samples/async-write-read-contig-1d-small.json | |
| - name: Test h5bench ASYNC write 1D contiguous (memory) strided (file) | |
| run: | | |
| export HDF5_DIR=/opt/hdf5 | |
| export ABT_DIR=/opt/argobots | |
| export ASYNC_DIR=/opt/vol-async | |
| export HDF5_ASYNC_MAX_MEM_MB=1024 | |
| cd build-async | |
| python3 ../samples/update.py ../samples/async-write-1d-contig-strided.json | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/async-write-1d-contig-strided.json | |
| - name: Test h5bench ASYNC write 1D contiguous (memory) contiguous (file) | |
| run: | | |
| export HDF5_DIR=/opt/hdf5 | |
| export ABT_DIR=/opt/argobots | |
| export ASYNC_DIR=/opt/vol-async | |
| export HDF5_ASYNC_MAX_MEM_MB=1024 | |
| cd build-async | |
| python3 ../samples/update.py ../samples/async-write-1d-contig-contig.json | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/async-write-1d-contig-contig.json | |
| - name: Test h5bench ASYNC write 1D contiguous (memory) interleaved (file) | |
| run: | | |
| export HDF5_DIR=/opt/hdf5 | |
| export ABT_DIR=/opt/argobots | |
| export ASYNC_DIR=/opt/vol-async | |
| export HDF5_ASYNC_MAX_MEM_MB=1024 | |
| cd build-async | |
| python3 ../samples/update.py ../samples/async-write-1d-contig-interleaved.json | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/async-write-1d-contig-interleaved.json | |
| - name: Test h5bench ASYNC write 1D interleaved (memory) contiguous (file) | |
| run: | | |
| export HDF5_DIR=/opt/hdf5 | |
| export ABT_DIR=/opt/argobots | |
| export ASYNC_DIR=/opt/vol-async | |
| export HDF5_ASYNC_MAX_MEM_MB=1024 | |
| cd build-async | |
| python3 ../samples/update.py ../samples/async-write-1d-interleaved-contig.json | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/async-write-1d-interleaved-contig.json | |
| - name: Test h5bench ASYNC write 1D interleaved (memory) interleaved (file) | |
| run: | | |
| export HDF5_DIR=/opt/hdf5 | |
| export ABT_DIR=/opt/argobots | |
| export ASYNC_DIR=/opt/vol-async | |
| export HDF5_ASYNC_MAX_MEM_MB=1024 | |
| cd build-async | |
| python3 ../samples/update.py ../samples/async-write-1d-interleaved-interleaved.json | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/async-write-1d-interleaved-interleaved.json | |
| - name: Test h5bench ASYNC write 2D contiguous (memory) contiguous (file) | |
| run: | | |
| export HDF5_DIR=/opt/hdf5 | |
| export ABT_DIR=/opt/argobots | |
| export ASYNC_DIR=/opt/vol-async | |
| export HDF5_ASYNC_MAX_MEM_MB=1024 | |
| cd build-async | |
| python3 ../samples/update.py ../samples/async-write-2d-contig-contig.json | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/async-write-2d-contig-contig.json | |
| - name: Test h5bench ASYNC write 2D contiguous (memory) interleaved (file) | |
| run: | | |
| current="$PWD" | |
| export HDF5_DIR=/opt/hdf5 | |
| export ABT_DIR=/opt/argobots | |
| export ASYNC_DIR=/opt/vol-async | |
| export HDF5_ASYNC_MAX_MEM_MB=1024 | |
| cd build-async | |
| python3 ../samples/update.py ../samples/async-write-2d-contig-interleaved.json | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/async-write-2d-contig-interleaved.json | |
| - name: Test h5bench ASYNC write 2D interleaved (memory) contiguous (file) | |
| run: | | |
| export HDF5_DIR=/opt/hdf5 | |
| export ABT_DIR=/opt/argobots | |
| export ASYNC_DIR=/opt/vol-async | |
| export HDF5_ASYNC_MAX_MEM_MB=1024 | |
| cd build-async | |
| python3 ../samples/update.py ../samples/async-write-2d-interleaved-contig.json | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/async-write-2d-interleaved-contig.json | |
| - name: Test h5bench ASYNC write 2D interleaved (memory) interleaved (file) | |
| run: | | |
| export HDF5_DIR=/opt/hdf5 | |
| export ABT_DIR=/opt/argobots | |
| export ASYNC_DIR=/opt/vol-async | |
| export HDF5_ASYNC_MAX_MEM_MB=1024 | |
| cd build-async | |
| python3 ../samples/update.py ../samples/async-write-2d-interleaved-interleaved.json | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/async-write-2d-interleaved-interleaved.json | |
| - name: Test h5bench ASYNC write 3D contiguous (memory) contiguous (file) | |
| run: | | |
| export HDF5_DIR=/opt/hdf5 | |
| export ABT_DIR=/opt/argobots | |
| export ASYNC_DIR=/opt/vol-async | |
| export HDF5_ASYNC_MAX_MEM_MB=1024 | |
| cd build-async | |
| python3 ../samples/update.py ../samples/async-write-3d-contig-contig.json | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/async-write-3d-contig-contig.json | |
| - name: Test h5bench ASYNC read 1D contiguous (memory) contiguous (file) full | |
| run: | | |
| export HDF5_DIR=/opt/hdf5 | |
| export ABT_DIR=/opt/argobots | |
| export ASYNC_DIR=/opt/vol-async | |
| export HDF5_ASYNC_MAX_MEM_MB=1024 | |
| cd build-async | |
| python3 ../samples/update.py ../samples/async-write-1d-contig-contig-read-full.json | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/async-write-1d-contig-contig-read-full.json | |
| - name: Test h5bench ASYNC read 1D contiguous (memory) contiguous (file) partial | |
| run: | | |
| export HDF5_DIR=/opt/hdf5 | |
| export ABT_DIR=/opt/argobots | |
| export ASYNC_DIR=/opt/vol-async | |
| export HDF5_ASYNC_MAX_MEM_MB=1024 | |
| cd build-async | |
| python3 ../samples/update.py ../samples/async-write-1d-contig-contig-read-partial.json | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/async-write-1d-contig-contig-read-partial.json | |
| - name: Test h5bench ASYNC read 1D contiguous (memory) contiguous (file) strided | |
| run: | | |
| export HDF5_DIR=/opt/hdf5 | |
| export ABT_DIR=/opt/argobots | |
| export ASYNC_DIR=/opt/vol-async | |
| export HDF5_ASYNC_MAX_MEM_MB=1024 | |
| cd build-async | |
| python3 ../samples/update.py ../samples/async-write-1d-contig-contig-read-strided.json | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/async-write-1d-contig-contig-read-strided.json | |
| - name: Test h5bench ASYNC read 2D contiguous (memory) contiguous (file) full | |
| run: | | |
| export HDF5_DIR=/opt/hdf5 | |
| export ABT_DIR=/opt/argobots | |
| export ASYNC_DIR=/opt/vol-async | |
| export HDF5_ASYNC_MAX_MEM_MB=1024 | |
| cd build-async | |
| python3 ../samples/update.py ../samples/async-write-2d-contig-contig-read-full.json | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/async-write-2d-contig-contig-read-full.json | |
| - name: Test h5bench ASYNC read 3D contiguous (memory) contiguous (file) full | |
| run: | | |
| export HDF5_DIR=/opt/hdf5 | |
| export ABT_DIR=/opt/argobots | |
| export ASYNC_DIR=/opt/vol-async | |
| export HDF5_ASYNC_MAX_MEM_MB=1024 | |
| cd build-async | |
| python3 ../samples/update.py ../samples/async-write-2d-contig-contig-read-full.json | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/async-write-2d-contig-contig-read-full.json | |
| - name: Test h5bench ASYNC amrex | |
| run: | | |
| export HDF5_DIR=/opt/hdf5 | |
| export ABT_DIR=/opt/argobots | |
| export ASYNC_DIR=/opt/vol-async | |
| export HDF5_ASYNC_MAX_MEM_MB=1024 | |
| cd build-async | |
| python3 ../samples/update.py ../samples/async-amrex.json | |
| ./h5bench --debug --abort-on-failure ../samples/async-amrex.json | |
| - name: Setup tmate session | |
| if: ${{ failure() }} | |
| uses: mxschmitt/action-tmate@v3 | |
| - name: Upload artifact | |
| if: always() | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: test | |
| path: build*/storage/**/std* | |
| retention-days: 5 |