Update CI integration with NERSC #165
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| name: h5bench (HDF5 develop test) | |
| on: | |
| pull_request: | |
| workflow_dispatch: | |
| jobs: | |
| h5bench: | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 60 | |
| env: | |
| OMPI_ALLOW_RUN_AS_ROOT: 1 | |
| OMPI_ALLOW_RUN_AS_ROOT_CONFIRM: 1 | |
| OMPI_MCA_rmaps_base_oversubscribe: "yes" | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| submodules: true | |
| - name: Dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install cmake gcc gdb libtool zlib1g-dev python3 libopenmpi-dev -y | |
| # HDF5 | |
| git clone https://github.com/HDFGroup/hdf5.git | |
| # VOL-ASYNC | |
| git clone --recursive https://github.com/hpc-io/vol-async.git --branch v1.7 /opt/vol-async | |
| python3 -m pip install pytest | |
| - name: Build HDF5 develop | |
| run: | | |
| export HDF5_DIR=/opt/hdf5 | |
| export HDF5_LIBTOOL=/usr/bin/libtoolize | |
| mkdir $HDF5_DIR | |
| cd hdf5 | |
| ./autogen.sh | |
| ./configure --prefix=$HDF5_DIR --enable-parallel --enable-threadsafe --enable-unsupported | |
| make -j 2 | |
| make install | |
| - name: Build Argobots | |
| run: | | |
| export ABT_DIR=/opt/argobots | |
| cd /opt/vol-async/argobots | |
| ./autogen.sh | |
| ./configure --prefix=$ABT_DIR | |
| make -j 2 | |
| make install | |
| - name: Build VOL-ASYNC | |
| run: | | |
| export HDF5_DIR=/opt/hdf5 | |
| export ABT_DIR=/opt/argobots | |
| export ASYNC_DIR=/opt/vol-async | |
| cd $ASYNC_DIR | |
| mkdir build | |
| cd build | |
| cmake .. -DCMAKE_INSTALL_PREFIX=$ASYNC_DIR -DCMAKE_PREFIX_PATH=$HDF5_DIR -DENABLE_WRITE_MEMCPY=ON | |
| make | |
| make install | |
| - name: Test VOL-ASYNC | |
| run: | | |
| export HDF5_DIR=/opt/hdf5 | |
| export HDF5_HOME=$HDF5_DIR | |
| export ABT_DIR=/opt/argobots | |
| export ASYNC_DIR=/opt/vol-async | |
| export LD_LIBRARY_PATH=$ASYNC_DIR/lib:$HDF5_DIR/lib:$ABT_DIR/lib:$LD_LIBRARY_PATH | |
| export HDF5_PLUGIN_PATH="$ASYNC_DIR/include" | |
| export HDF5_VOL_CONNECTOR="async under_vol=0;under_info={}" | |
| cd $ASYNC_DIR/build | |
| export LD_PRELOAD=$ASYNC_DIR/lib/libh5async.so:$ABT_DIR/lib/libabt.so:$HDF5_DIR/lib/libhdf5.so | |
| ctest | |
| - name: Build h5bench SYNC | |
| run: | | |
| export HDF5_DIR=/opt/hdf5 | |
| export HDF5_HOME=$HDF5_DIR | |
| export LD_LIBRARY_PATH=$HDF5_HOME/lib:$LD_LIBRARY_PATH | |
| mkdir build-sync | |
| cd build-sync | |
| cmake .. \ | |
| -DH5BENCH_ALL=ON | |
| make -j 2 | |
| sudo make install | |
| sudo ldconfig | |
| - name: Build h5bench ASYNC | |
| run: | | |
| export HDF5_HOME=/opt/hdf5 | |
| export ABT_HOME=/opt/argobots | |
| export ASYNC_HOME=/opt/vol-async | |
| export LD_LIBRARY_PATH=$ASYNC_HOME/lib:$HDF5_HOME/lib:$ABT_HOME/lib:$LD_LIBRARY_PATH | |
| mkdir build-async | |
| cd build-async | |
| cmake .. \ | |
| -DWITH_ASYNC_VOL:BOOL=ON \ | |
| -DCMAKE_C_FLAGS="-I$ASYNC_HOME/include -L$ASYNC_HOME/lib" \ | |
| -DH5BENCH_ALL=ON | |
| make -j 2 | |
| sudo make install | |
| sudo ldconfig | |
| - name: Test h5bench SYNC | |
| run: | | |
| export HDF5_DIR=/opt/hdf5 | |
| export ABT_DIR=/opt/argobots | |
| export ASYNC_DIR=/opt/vol-async | |
| cd build-sync | |
| ctest --verbose . | |
| - name: Test h5bench ASYNC | |
| run: | | |
| export HDF5_DIR=/opt/hdf5 | |
| export ABT_DIR=/opt/argobots | |
| export ASYNC_DIR=/opt/vol-async | |
| export HDF5_ASYNC_MAX_MEM_MB=1024 | |
| cd build-async | |
| ctest --verbose . | |
| - name: Setup tmate session | |
| if: ${{ failure() }} | |
| uses: mxschmitt/action-tmate@v3 | |
| - name: Upload artifact | |
| if: always() | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: test | |
| path: build*/storage/**/std* | |
| retention-days: 5 |