custom R dependency loader

hta-pharma · Apr 16, 2024 · 355b14e · 355b14e
1 parent 58afca7
commit 355b14e
Showing 1 changed file with 70 additions and 41 deletions.
diff --git a/.github/workflows/R-CMD-check-versions.yaml b/.github/workflows/R-CMD-check-versions.yaml
@@ -35,57 +35,86 @@
             r-version: ${{ matrix.config.r }}
             use-public-rspm: false
 
-        - name: Install pak (Windows + CRAN snapshot) 
-          if: runner.os == 'Windows' && matrix.config.date != 'latest'
+        - name: Determine the CRAN image to use
+          id: cran-image
           run: |
-              # Install pak
-              cat("::group::Install pak\n")
-              #lib <- Sys.getenv("R_LIB_FOR_PAK")
-              #dir.create(lib, showWarnings = FALSE, recursive = TRUE)
-              install.packages("pak", repos = sprintf(
-                  "https://r-lib.github.io/p/pak/%s/%s/%s/%s",
-                  "stable",
-                  .Platform$pkgType,
-                  R.Version()$os,
-                  R.Version()$arch
-              ))
-              cat("::endgroup::\n")
-          shell: Rscript {0}
-
-        - name: Install pak (Unix + CRAN snapshot)
-          if: runner.os != 'Windows' && matrix.config.date != 'latest'
+            if ("${{ matrix.config.date }}" == "latest") {
+              echo "::set-output name=image::https://packagemanager.posit.co/cran"
+            } else {
+              echo "::set-output name=image::https://packagemanager.posit.co/cran/${{ matrix.config.date }}"
+            }
+          shell: bash
+
+        - name: Debug image
           run: |
-              # Install pak
-              echo "::group::Install pak"
-              if which sudo >/dev/null; then SUDO="sudo -E --preserve-env=PATH env"; else SUDO=""; fi
-              #$SUDO R -q -e 'dir.create(Sys.getenv("R_LIB_FOR_PAK"), recursive = TRUE, showWarnings = FALSE)'
-              $SUDO R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/%s/%s/%s/%s", "stable", .Platform$pkgType, R.Version()$os, R.Version()$arch))'
-              echo "::endgroup::"
+            echo ${{ steps.cran-image.outputs.image }}
           shell: bash
 
+        - uses: ./.github/actions/setup-r-dependencies.yaml
+          with:
+            cache: true
+            dependency_repo: ${{ steps.cran-image.outputs.image }}
+            working-directory: ${{ github.workspace }}
+            extra-packages: any::rcmdcheck
+
 
-          # Install package dependencies (if a specific date)     
-        - name: Install dependencies ${{ matrix.config.date }} (CRAN snapshot)
-          if: matrix.config.date != 'latest'
-          run: |
-            options(
-              repos = c(CRAN = "https://packagemanager.posit.co/cran/${{ matrix.config.date }}")
-              )
+        # - name: Install curl
+        #   if: matrix.os == 'ubuntu-latest' && matrix.config.date != 'latest'
+        #   run: |
+        #     sudo apt install libcurl4-openssl-dev
 
-            install.packages(c("rcmdcheck", "devtools"), Ncpus = parallel::detectCores()-1)
+        # - name: Install pak (Windows + CRAN snapshot) 
+        #   if: runner.os == 'Windows' && matrix.config.date != 'latest'
+        #   run: |
+        #       # Install pak
+        #       cat("::group::Install pak\n")
+        #       #lib <- Sys.getenv("R_LIB_FOR_PAK")
+        #       #dir.create(lib, showWarnings = FALSE, recursive = TRUE)
+        #       install.packages("pak", repos = sprintf(
+        #           "https://r-lib.github.io/p/pak/%s/%s/%s/%s",
+        #           "stable",
+        #           .Platform$pkgType,
+        #           R.Version()$os,
+        #           R.Version()$arch
+        #       ))
+        #       cat("::endgroup::\n")
+        #   shell: Rscript {0}
+
+        # - name: Install pak (Unix + CRAN snapshot)
+        #   if: runner.os != 'Windows' && matrix.config.date != 'latest'
+        #   run: |
+        #       # Install pak
+        #       echo "::group::Install pak"
+        #       if which sudo >/dev/null; then SUDO="sudo -E --preserve-env=PATH env"; else SUDO=""; fi
+        #       #$SUDO R -q -e 'dir.create(Sys.getenv("R_LIB_FOR_PAK"), recursive = TRUE, showWarnings = FALSE)'
+        #       $SUDO R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/%s/%s/%s/%s", "stable", .Platform$pkgType, R.Version()$os, R.Version()$arch))'
+        #       echo "::endgroup::"
+        #   shell: bash
 
-            pak::pkg_install(".", dependencies = TRUE, upgrade = TRUE)
 
-            #devtools::install(".", dependencies = TRUE, upgrade = TRUE, Ncpus = parallel::detectCores()-1)
+        #   # Install package dependencies (if a specific date)     
+        # - name: Install dependencies ${{ matrix.config.date }} (CRAN snapshot)
+        #   if: matrix.config.date != 'latest'
+        #   run: |
+        #     options(
+        #       repos = c(CRAN = "https://packagemanager.posit.co/cran/${{ matrix.config.date }}")
+        #       )
 
-          shell: Rscript {0}
+        #     #install.packages(c("rcmdcheck", "devtools"), Ncpus = parallel::detectCores()-1)
 
-          # Install package dependencies (if lastest)     
-        - uses: r-lib/actions/setup-r-dependencies@v2
-          if: matrix.config.date == 'latest'
-          with:
-            extra-packages: any::rcmdcheck
-            needs: check
+        #     pak::pkg_install(".", dependencies = TRUE, upgrade = TRUE)
+
+        #     #devtools::install(".", dependencies = TRUE, upgrade = TRUE, Ncpus = parallel::detectCores()-1)
+
+        #   shell: Rscript {0}
+
+        #   # Install package dependencies (if lastest)
+        # - name: Install dependencies (CRAN latest)    
+        #   if: matrix.config.date == 'latest'
+        #   uses: r-lib/actions/setup-r-dependencies@v2
+        #   with:
+        #     extra-packages: any::rcmdcheck
+        #     needs: check
 
 
         - name: Session info