Test ROI toggle.

igvteam · Feb 7, 2024 · b45c89d · b45c89d
1 parent d21c50f
commit b45c89d
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Showing 2 changed files with 81 additions and 4 deletions.
diff --git a/igvwebConfig.js b/igvwebConfig.js
@@ -6,7 +6,7 @@ var igvwebConfig = {
 
     // Supply a drobpox api key to enable the Dropbox file picker in the load menus.  This is optional
     //dropboxAPIKey: "...",
-    
+
      // Supply a Google client id to enable the Google file picker in the load menus.  This is optional
     //clientId: "...",
     // apiKey: "...",
@@ -24,12 +24,89 @@ var igvwebConfig = {
     igvConfig:
         {
             genome: "hg19",
-            locus: "all",
+            // locus: "all",
+            locus: '1:67,655,272-67,684,468',
             genomeList: "resources/genomes.json",
             queryParametersSupported: true,
             showChromosomeWidget: true,
             showSVGButton: false,
-            tracks: []
+
+            showROITableButton: true,
+
+            roi:
+                [
+                    {
+                        name: 'ROI set 1',
+                        url: 'https://s3.amazonaws.com/igv.org.test/data/roi/roi_bed_1.bed',
+                        indexed: false,
+                        color: "rgba(94,255,1,0.25)"
+                    },
+                    {
+                        name: "ROI set 2",
+                        color: "rgba(3,52,249,0.25)",
+                        features: [
+                            {
+                                chr: "chr1",
+                                start: 67670000,
+                                end: 67671080,
+                                name: 'Set 2 feature 1'
+                            },
+                            {
+                                chr: "chr1",
+                                start: 67672095,
+                                end: 67673993
+                            },
+                            {
+                                chr: "chr1",
+                                start: 67674681,
+                                end: 67675237
+                            },
+                            {
+                                chr: "chr1",
+                                start: 67676055,
+                                end: 67676710
+                            },
+                            {
+                                chr: "chr1",
+                                start: 67677561,
+                                end: 67677888
+                            },
+                            {
+                                chr: "chr1",
+                                start: 67679263,
+                                end: 67679394
+                            },
+                            {
+                                chr: "chr1",
+                                start: 67679950,
+                                end: 67680180
+                            },
+                            {
+                                chr: "chr1",
+                                start: 67681849,
+                                end: 67682340
+                            }
+                        ]
+                    }
+                ],
+
+            tracks:
+                [
+                    {
+                        name: 'Some features',
+                        url: 'https://s3.amazonaws.com/igv.org.test/data/roi/some_features.bed',
+                        indexed: false,
+                        roi:
+                            [
+                                {
+                                    name: 'Track Based ROI Set',
+                                    url: 'https://s3.amazonaws.com/igv.org.test/data/roi/roi_bed_2.bed',
+                                    indexed: false,
+                                    color: "rgba(255,1,199,0.25)"
+                                },
+                            ]
+                    }
+                ]
         }
 
 }
diff --git a/package.json b/package.json
@@ -18,7 +18,7 @@
   "homepage": "https://github.com/igvteam/igv-webapp#readme",
   "devDependencies": {
     "fs-extra": "^8.1.0",
-    "igv": "github:igvteam/igv.js#master",
+    "igv": "github:igvteam/igv.js#dat_roi",
     "igv-widgets": "github:igvteam/igv-widgets#v1.5.8",
     "google-utils": "github:igvteam/google-utils#v1.0.2",
     "rollup": "^2.28.1",