Update README.md

immunogenomics · Jul 27, 2023 · 24b1217 · 24b1217
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Showing 1 changed file with 1 addition and 1 deletion.
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@@ -76,7 +76,7 @@ Followed by SCENT algorithm:
 ```r
 SCENT_obj <- SCENT_algorithm(object = SCENT_obj, celltype = "Tcell", ncores = 6, regr = 'poisson', bin = TRUE)
 ```
-The user specifies a 'celltype' (in this case “Tcell”) for association analysis (in meta.data slot in SCENT object), 'ncores' for the number of cores for parallelized bootstrapping, 'regr' for the regression type (Poisson ‘poisson’ or Negative Binomial ‘negbin’ regression), and 'bin' for whether to binarize ATAC counts (TRUE for binarization or FALSE for not).
+The user specifies a `celltype` (in this case “Tcell”) for association analysis (in meta.data slot in SCENT object), `ncores` for the number of cores for parallelized bootstrapping, `regr` for the regression type (Poisson ‘poisson’ or Negative Binomial ‘negbin’ regression), and `bin` for whether to binarize ATAC counts (TRUE for binarization or FALSE for not).
 
 The output of the SCENT algorithm will be contained in the field:
 ```r