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Update README.md
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shakson-isaac authored Jul 27, 2023
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Expand Up @@ -192,8 +192,8 @@ Arguments in the bash file are user specified as follows:
|3 | file_SCENT_obj | SCENT object that contains atac_matrix, rna_matrix, metafile, peak_gene_list, etc. To run the SCENT algorithm |
|4 | celltype | User specified celltype (ex. "Tcells") to run the SCENT algorithm |
|5 | regr | User specified regression type (ex. "poisson") to run SCENT algorithm |
|6 | bin | User specified choice to binarize ATAC counts (ex. TRUE) or not |
|7 | output_dir | User specified directory to output the SCENT results to aggregate once completed. |
|6 | bin | User specified choice to binarize ATAC counts (ex. TRUE) |
|7 | output_dir | User specified directory to output the SCENT results to aggregate once completed |


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