Fix mistake in corPFSOS bootstrap

[holgstr]

Fixes mistake I found in corPFSOS. We displayed corTrans() of initial TransitionParameters, need corTrans() of estimated object instead.

[danielinteractive]

Thanks @holgstr , can you please add a test that first reproduces the error / makes sure it works correctly now?

[github-actions]

Unit Tests Summary

    1 files    16 suites   2m 14s ⏱️
  81 tests   80 ✔️ 1 💤 0 ❌
185 runs  184 ✔️ 1 💤 0 ❌

Results for commit abdf4a0.

♻️ This comment has been updated with latest results.

[github-actions]

Unit Test Performance Difference

Test Suite	$Status$	Time on main	$±Time$	$±Tests$	$±Skipped$	$±Failures$	$±Errors$
corPFSOS	👶		$+1.94$	$+1$	$0$	$0$	$0$
estimateParams	💚	$27.84$	$-1.01$	$0$	$0$	$0$	$0$
getSimulatedDataDistib	💚	$99.96$	$-1.37$	$0$	$0$	$0$	$0$

Additional test case details

Test Suite	$Status$	Time on main	$±Time$	Test Case
corPFSOS	👶		$+1.94$	corPFSOS_returns_correct_central_estimate
getSimulatedDataDistib	💔	$34.54$	$+1.12$	getSimulatedData_generates_distributions_as_expected_PW
getSimulatedDataDistib	💚	$53.39$	$-2.04$	getSimulatedData_generates_distributions_as_expected_Weibull

Results for commit 0c076cb

♻️ This comment has been updated with latest results.

[github-actions]

Code Coverage Summary

Filename                     Stmts    Miss  Cover    Missing
-------------------------  -------  ------  -------  ----------------------
R/assertions.R                  15       0  100.00%
R/corPFSOS.R                    91      37  59.34%   34-53, 92-113, 303-321
R/empSignificant.R              59       0  100.00%
R/estimateParams.R              75       4  94.67%   138-141
R/eventTracking.R               88       2  97.73%   48, 244
R/getClinicalTrials.R           71       0  100.00%
R/getSimulatedData.R           109       0  100.00%
R/getWaitTimeSum.R              29       2  93.10%   45, 48
R/hazardFunctions.R             26       0  100.00%
R/piecewiseDistribution.R       32       0  100.00%
R/piecewiseHazards.R            18       0  100.00%
R/survivalFunctions.R          111       0  100.00%
R/transitionParameters.R        42       0  100.00%
TOTAL                          766      45  94.13%

Diff against main

Filename              Stmts    Miss  Cover
------------------  -------  ------  -------
R/corPFSOS.R             -1     -55  +59.34%
R/estimateParams.R        0      -1  +1.33%
TOTAL                    -1     -56  +7.29%

Results for commit: abdf4a0

Minimum allowed coverage is 80%

♻️ This comment has been updated with latest results

[danielinteractive]

but this would not be correct?
What you can do e.g. is to write down the correct result you get now and compare with that here.

[holgstr]

I see what you mean :)