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Apply PEP8 #60

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Apply PEP8 #60

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1447f3f
Apply PEP8
ayham-1 Oct 23, 2019
c61265a
Fix intermine/query.py PEP8 errors.
ayham-1 Oct 23, 2019
fb35f0e
Fix list.py and listmanager.py
ayham-1 Oct 23, 2019
25abaf7
Fix files to PEP8
ayham-1 Oct 23, 2019
ef92d1f
Apply PEP8 on sample
ayham-1 Oct 23, 2019
b7306a7
Add comments for new functions.
ayham-1 Oct 23, 2019
7fe3889
Fix project not building.
ayham-1 Oct 23, 2019
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34 changes: 20 additions & 14 deletions intermine/bar_chart.py
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Original file line number Diff line number Diff line change
Expand Up @@ -102,12 +102,14 @@ def plot_go_vs_p(list_name):
def autolabel(rects, ax):
i = 0
for rect in rects:
x = rect.get_x() + rect.get_width()/2.
x = rect.get_x() + rect.get_width() / 2.
y = rect.get_height()
ax.annotate(gene_count[i], (x, y), xytext=(0, 5),
ax.annotate(gene_count[i], (x, y),
xytext=(0, 5),
textcoords="offset points",
ha='center', va='bottom')
i = i+1
ha='center',
va='bottom')
i = i + 1

autolabel(ax.patches, ax)

Expand Down Expand Up @@ -169,12 +171,14 @@ def plot_go_vs_count(list_name):
def autolabel(rects, ax):
i = 0
for rect in rects:
x = rect.get_x() + rect.get_width()/2.
x = rect.get_x() + rect.get_width() / 2.
y = rect.get_height()
ax.annotate(annotation_count[i], (x, y), xytext=(0, 5),
ax.annotate(annotation_count[i], (x, y),
xytext=(0, 5),
textcoords="offset points",
ha='center', va='bottom')
i = i+1
ha='center',
va='bottom')
i = i + 1

autolabel(ax.patches, ax)
ax.margins(y=0.1)
Expand All @@ -194,7 +198,7 @@ def get_query(xml):
req.pathname2url(xml)
r = requests.get(link)
list = (r.text).split('\n')
for i in range(0, len(list)-1):
for i in range(0, len(list) - 1):
list[i] = list[i].split('\t')
return (list)

Expand Down Expand Up @@ -223,7 +227,7 @@ def query_to_barchart_log(xml, resp):
store = store.split(' ')
x_val = []
y_val = []
for i in range(0, len(list)-1):
for i in range(0, len(list) - 1):
x_val.append(list[i][1])
y_val.append(float(list[i][2]))

Expand All @@ -248,12 +252,14 @@ def query_to_barchart_log(xml, resp):
def autolabel(rects, ax):
i = 0
for rect in rects:
x = rect.get_x() + rect.get_width()/2.
x = rect.get_x() + rect.get_width() / 2.
y = rect.get_height()
ax.annotate(y_val[i], (x, y), xytext=(0, 5),
ax.annotate(y_val[i], (x, y),
xytext=(0, 5),
textcoords="offset points",
ha='center', va='bottom')
i = i+1
ha='center',
va='bottom')
i = i + 1

autolabel(ax.patches, ax)

Expand Down
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