Upped mamba version in Dockerfile #34

	name: CI

	on:
	push:
	branches: [ master ]
	pull_request:
	branches: [ master ]

	jobs:
	build:
	runs-on: ubuntu-latest

	steps:
	- name: Checkout
	uses: actions/checkout@v2

	- name: Set up Docker Buildx
	uses: docker/setup-buildx-action@v1

	- name: Build and push
	uses: docker/build-push-action@v2
	with:
	context: .
	file: ./Dockerfile
	tags: keggcharter:latest
	outputs: type=docker,dest=/tmp/keggcharter.tar

	- name: Upload artifact
	uses: actions/upload-artifact@v2
	with:
	name: keggcharter
	path: /tmp/keggcharter.tar

	use:
	runs-on: ubuntu-latest
	needs: build
	steps:
	- name: Set up Docker Buildx
	uses: docker/setup-buildx-action@v1

	- name: Download artifact
	uses: actions/download-artifact@v2
	with:
	name: keggcharter
	path: /tmp

	- name: Load Docker image
	run: \|
	docker load --input /tmp/keggcharter.tar
	docker image ls -a

	- name: Check base entrypoint
	run: docker run keggcharter /bin/bash -c "ls"

	- name: Run KEGGCharter
	run: docker run keggcharter /bin/bash -c "keggcharter -f KEGGCharter/ci/keggcharter_input.tsv -rd resources_directory -mm 00190,00680 -keggc 'Cross-reference (KEGG)' -gcol mg -tcol mt_0.01a,mt_1a,mt_100a,mt_0.01b,mt_1b,mt_100b,mt_0.01c,mt_1c,mt_100c -tc 'Taxonomic lineage (SPECIES)' -mm 00680"

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