This github repository is source control for the running workflows on the Google Cloud Platform for the ISB-CGC documentation at http://isb-cancer-genomics-cloud.readthedocs.org.
How to get started materials:
- Launching a Virtual Machine (VM)
- Launching a Storage Bucket
- Creating and Managing Persistent Disks
- CHEAT SHEET
- Your First Workflow on Google Cloud Virtual Machine
- Running Workflow with GCSFUSE
- Running NEXTFLOW pipeline on public Bam file From ISB-CGC
The CWL-Runner directory of this repository contains a set of wrapper scripts originally taken from Google Genomics Pipelines and API Examples and updated for compatibility with the latest Linux packages. Use this wrapper to launch CWL workflows in Google Cloud.
For general information about the ISB-CGC, please contact us at [email protected]. We are especially keen on learning about your particular use-cases, and how we can help you take advantage of the latest in cloud-computing technologies to answer your research questions.
For feature requests or bug reports, please send e-mail to [email protected].