update helper scripts with paths for new datafreeze

jeremymcrae · Jul 15, 2015 · 2c334a8 · 2c334a8
1 parent 37c9030
commit 2c334a8
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Showing 2 changed files with 4 additions and 4 deletions.
diff --git a/scripts/analyse_individual.py b/scripts/analyse_individual.py
@@ -18,8 +18,8 @@
 
 filter_code = os.path.join(app_folder, "src", "main", "python", "clinical_filter.py")
 
-datafreeze = "/nfs/ddd0/Data/datafreeze/ddd_data_releases/2014-11-04/"
-known_genes = "/lustre/scratch113/projects/ddd/resources/ddd_data_releases/2014-11-04/DDG2P/dd_genes_for_clinical_filter"
+datafreeze = "/nfs/ddd0/Data/datafreeze/ddd_data_releases/2015-04-13"
+known_genes = "/lustre/scratch113/projects/ddd/resources/ddd_data_releases/2015-04-13/DDG2P/dd_genes_for_clinical_filter"
 ped_file = os.path.join(datafreeze, "family_relationships.txt")
 alternate_ids = os.path.join(datafreeze, "person_sanger_decipher.txt")
 syndrome_regions_filename = "/lustre/scratch113/projects/ddd/resources/decipher_syndrome_list_20140428.txt"

diff --git a/scripts/submit_lsf_job_array.py b/scripts/submit_lsf_job_array.py
@@ -18,8 +18,8 @@
 
 FILTER_CODE = os.path.join(APP_FOLDER, "src", "main", "python", "clinical_filter.py")
 
-DATAFREEZE = "/nfs/ddd0/Data/datafreeze/ddd_data_releases/2014-11-04/"
-KNOWN_GENES_PATH = "/lustre/scratch113/projects/ddd/resources/ddd_data_releases/2014-11-04/DDG2P/dd_genes_for_clinical_filter"
+DATAFREEZE = "/nfs/ddd0/Data/datafreeze/ddd_data_releases/2015-04-13"
+KNOWN_GENES_PATH = "/lustre/scratch113/projects/ddd/resources/ddd_data_releases/2015-04-13/DDG2P/dd_genes_for_clinical_filter"
 ALT_IDS_PATH = os.path.join(DATAFREEZE, "person_sanger_decipher.txt")
 PED_PATH = os.path.join(DATAFREEZE, "family_relationships.txt")
 SYNDROMES_PATH = "/lustre/scratch113/projects/ddd/resources/decipher_syndrome_list_20140428.txt"