only include genes for which the variant passed in the tabular output

jeremymcrae · Jul 2, 2015 · a56f97b · a56f97b
1 parent 2476280
commit a56f97b
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/src/main/python/clinicalfilter/reporting.py b/src/main/python/clinicalfilter/reporting.py
@@ -124,7 +124,7 @@ def _get_output_line(self, candidate, dad_aff, mom_aff, alternate_ID):
             max_maf = "NA"
         max_maf = str(max_maf)
 
-        genes = [x if x is not None else "." for x in var.get_genes()]
+        genes = [x for x in candidate[3]]
 
         output_line = [self.family.child.get_id(), alternate_ID, \
             self.family.child.get_gender(), var.get_chrom(), \