table with bits/kmer in benchmarks/README

jermp · Nov 23, 2023 · 52a4ce0 · 52a4ce0
1 parent 3bc3c16
commit 52a4ce0
Showing 1 changed file with 9 additions and 1 deletion.
diff --git a/benchmarks/README.md b/benchmarks/README.md
@@ -26,4 +26,12 @@ The query times are relative to the following configuration:
 
 - Processor: Intel i9-9900K @ 3.60 GHz;
 - Compiler: gcc 11.2.0;
-- OS: GNU/Linux 5.13.0-52-generic x86_64.
+- OS: GNU/Linux 5.13.0-52-generic x86_64.
+
+### Space in bits/kmer
+
+| Dictionary |elegans ||| cod   ||| kesterl ||| human |||
+|:------------------|:------:|:------:|:------:|:------:|:------:|:------:|:------:|:------:|:------:|:-----:|:-------:|:-----:|
+|                   | k=31 | k=47 | k=63 | k=31 | k=47 | k=63 | k=31 | k=47 | k=63 | k=31 | k=47 | k=63 |
+| SSHash, **regular**   | 5.86 | 4.29 | 3.51 | 7.84 | 5.17 | 4.26 | 7.53 | 4.67 | 3.76 | 8.70 | 5.65 | 4.64 |
+| SSHash, **canonical** | 6.70 | 4.85 | 3.93 | 8.80 | 5.81 | 4.83 | 8.51 | 5.32 | 4.24 | 9.80 | 6.51 | 5.33 |