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Generating Vanda MAGs with Snakemake Workflow

Log onto farm. Then start screen.

screen -S vanda_snakemake

Run snakemake workflow with

snakemake --cluster "sbatch -t {cluster.time} -p {cluster.partition} -N {cluster.nodes}" --cluster-config cluster_config.yml --jobs 28 --latency-wait=15 --use-conda

Based on example from https://github.com/ctb/2019-snakemake-slurm

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