Bump numpy from 2.0.1 to 2.1.1

Bumps [numpy](https://github.com/numpy/numpy) from 2.0.1 to 2.1.1.
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](numpy/numpy@v2.0.1...v2.1.1)

---
updated-dependencies:
- dependency-name: numpy
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>

requirements.txt

@@ -2,7 +2,7 @@ coverage==7.6.1
 ete3==3.1.3
 jinja2==3.1.4
 jsonrpcbase==0.2.0
-numpy==2.0.1
+numpy==2.1.1
 PyQt5==5.15.11
 pytest==8.3.2
 pytest-cov==5.0.0