PomBase frontend code

See https://github.com/pombase/website/tree/master/

Build and test status

Deploying

The site is deployed by building a container from the JSON output of pombase-chado-json, which is run nightly by this script:

https://github.com/pombase/pombase-legacy/blob/master/etc/load-all.sh

The container is build with:

https://github.com/pombase/pombase-chado/blob/master/etc/build_container.sh

Test setup

Get the code

git clone https://github.com/pombase/website.git pombase-website

cd pombase-website/

Run test server

ng serve --port 4242 --disable-host-check --host 0.0.0.0 --proxy-config proxy.conf.json

Run JSON/query server

https://github.com/pombase/pombase-chado-json

cargo run --release --bin pombase-server -- -c pombase_v2_config.json -m web-json/api_maps.json.gz -s web-json/gene_subsets.json -w /var/www/html/

Update generated docs

This is needed when the Markdown documentation changes or if the front page panel config changes.

./etc/update_generated_files.sh pombase-config/website/pombase_v2_config.json curation/data_files/

where:

• pombase-config is a checkout of https://github.com/pombase/pombase-config
• curation is a checkout of https://github.com/pombase/curation