The qiimer package provides R functions to read QIIME output files and create figures.
Types of files covered:
- "Classic" format OTU tables
- Distance matrices
- Metadata mapping files
- OTU mapping files (OTU ID to sequence ID)
- Rarefied alpha diversity tables
Also included: convenience functions for BLAST tables, distance matrix
objects, and biom-format OTU tables imported via the biom library.