Catch invalid interval for guess-plausible-variant (biocommons#605)

e.g., this dummy deletion was failing `ATM:c.8816_8817del` with an HGVSInvalidIntervalError
kyuhas · Jul 21, 2020 · 15c3937 · 15c3937
1 parent fceff98
commit 15c3937
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/misc/experimental/hgvs-guess-plausible-transcripts b/misc/experimental/hgvs-guess-plausible-transcripts
@@ -17,7 +17,7 @@ import copy
 import logging
 import sys
 
-from hgvs.exceptions import HGVSInvalidVariantError
+from hgvs.exceptions import HGVSInvalidVariantError, HGVSInvalidIntervalError
 import hgvs.dataproviders.uta
 import hgvs.normalizer
 import hgvs.parser
@@ -58,8 +58,8 @@ def generate_plausible_variants(hdp, hv, v):
             hv.validate(v2)
             _logger.debug("  {}: validated".format(v2))
             yield v2
-        except HGVSInvalidVariantError:
-            _logger.debug("  {}: failed".format(v2))
+        except (HGVSInvalidVariantError, HGVSInvalidIntervalError) as e:
+            _logger.debug("  {}: failed: {}: {}".format(v2, type(e).__name__, str(e)))
             pass