Minor bug fix

labsyspharm · Oct 19, 2023 · 01fe957 · 01fe957
1 parent b80ca42
commit 01fe957
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Showing 2 changed files with 3 additions and 1 deletion.
diff --git a/config/schema.yml b/config/schema.yml
@@ -17,6 +17,8 @@ workflow:
   - cellpose-model
   - background-method
   - flowsom-model
+  - scanpy-model
+  - fastpg-model
 deprecated:
   quantification-mask: "--quant-opts '--masks ...'"
   illum: --start-at illumination

diff --git a/modules/downstream.nf b/modules/downstream.nf
@@ -10,7 +10,7 @@ workflow downstream {
     // Determine if there are any custom models specified
     inp = Channel.of( mcp.modules['downstream'] )
         .flatten()
-        .map{ it -> String m = "${it.name}Model";
+        .map{ it -> String m = "${it.name}-model";
             tuple(it, mcp.workflow.containsKey(m) ?
             file(mcp.workflow[m]) : 'built-in') }
         .combine(input)